Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02753 ATGGCTGAAAACTCCAATTCCTCCTTTCTTCAACCCTCAGTTCCCAAATTTGATGGATACTATGACTACTGGGCAATGCTAATGGAAAACTTGATTCGATCAAAGGAATTTTGGCCGCTAATTGAAACTGGCGTGACAGTTGCTCCTCCCAACGCCACCGCTGAACAGCTTCACATTGCCAATGAAAGTAAACTTAAGGATCTTTTAGTCAAGAACTTTCTTTTTCAAGCGATTGATCGAACGATCATGGAGACGATTTTGGTTCGAGAAACATCGAAGGATATTTATGCGATGAAGCAAAAATATCAAGGATCCACGAAGGTTAAACGAGCTCAGTTACAAGCTCTTCGCCGTGAGTTTGAGGTTCTtgagataaaagaaaatgaatctgTTAACGAGTACTTTGCAAGAACTCTTGCAATTGCGAACAAGATGACATTACATGGTGAACGTGTAGAACAATCGACTGATGTGGCCACTTTAACCATTGATGAGCTGCAAAGTACTCTTATTGTCCAAGAACAGAGGATGAAGTACCAGAAAAGTGGTGGAGAAGAACAAGCTTTGAAAGTCTCCAATGGTGGGAGAGGATTCAATACAAGAGGCAGAGGACGAGGATCAAGCCGTGGTAGAGGCAGAGAAGAAACCTTGTTAATGACAAGAACTGATCAAGGAAGTGCAATTAGAGAAGAAAATTGGTATTTAGACTCTAGATGCAGTAATCATATGATAGGTAACAAAGAATGGTTATTTGAATTTGACCTTAGCTTCAAAGATTCTGTAAGACTTGGCAATGATGCTAGAATGGATGTAATGGGGAGAGGAAATGGTAAAATACATGTGATAATCAATGTGTATTATATTCCTGGACTAAGCATAAATCTTTTAAGTGTTGGTCAACTACAACAAAAGAATGTTACCATCATATTCAAAGAAGACACTTGCAAAGCTTATCATGAAGAAAAGGGCTTAATCTTCTCTACACAAATGTCTGCTAATAGGATGTTTATACTCACTGCACAAGTAATTGTTCCCATGTGTCTACAAGTCTCAAAGGAAGAACAAACTCAACTATGGCATAACAGGTATGGTCATCTCAGCATCAAAGGGCTGAAGTTGTTAACTAAACTGGATATGGTGAAAGGTTTACCTGAATTAGGAGAAATGGAAGAGAAATGCATCAGTTGCTTGGCTGGCAAGCAATACAGACAAGCCATATCCAAACAGGCTAAGTGGAGAGCAACAACAAAACTTCAGCTCATACATTCAGACATATGTGGACCCATTAATCCAAGCTCAAATGGTGGAAAAATGTACTTTATAACCTTTACTGATGACTTTAGTATAAAGACTTGGGTTTATGTGttaaaagaaaaagctgaggcatttgaaattttcaaaaattttaaactcCTAGTTGAAAATGAGTCTGGCTGTGTAATTCAAAGTCTAAGAACAGATAGAGGAGGAAAGTTCACCTCTAGTGCTTTCAATGAATTTTGGAGCTCTCAAGGAATTAAAAGGCAACTTACCACTGCCTacactccacaacaaaatggagtttcTGAGAGGAAGAATAAGACACTATTAAACATAATTAGAAGTATGTTAAATTGCataaatgtaccaaaaaagttcTGGCCAGAAGCTTTAAAATGGGCCACATATATCATGAATAGAAGTCCCACTGTATCTGTAAAGAACATGACTCCAGAAGAGGCCTGGAGTGGCATTAAACCAACCGTTACTCATTTCAGGGTATTTGGATGCATTGCTTATGTTCATGTACCACACACCAATAGAAGGAAGTTGGACAACAAGAGCATAGTGTGTGTCAATTTAGGCATCAGTGATGAGTCTAAAGCCTACAAATTATACAATCCCACATACAAGAAGATAATGATCAGCAAAGATGTAGTTTTTGATGAATCTAAAGCTTGGGATTGGGAAAACAAACAGAAGGACAACAATACAAACACACACAATGAGATACTTGTTGAAGATATTGCAGAAGATACAACACCAGTTGGCAATAATGGAAATCCTACACCTGAAGAGATGAGTTCAGGGAATGATAGTACAGAAGCAGAAGAGGAACAAAGAGTTGAAGACAGTGAAGATGATGATCTACTTGGCCCAAGAATAAGGAGAGTTCCAGGTCATCTCAGAGATTTTGTTATAGGAGAAGAAGTTGAAGAGGAACAAGAGTTACAAAATCTTGCTTATTATAGCAACTATGGAGATCCAGAAACCTATGACGAAGCTTACAAAAGCCAAGTGTGGAATGAGGCTATGGATAGTGAGATACAAGCTATAAAAGCCAACAATACATGGGAGTTGACAGATCTACCAAAAGGTACAAAGGTCATTGGGGTGAAATGGATCTTCAAAACCAAATACAAAGAAAATGGGCAAATAGACAAGCACAAGGCCAGGACTGTGTTAGCTTGGGCTGCAAGTAAAGGCTGGTATGTTTATCAACTAGATGTAAAAAGTGCCTTTTTGCATGGTGAACTTGCTGAGGACATTTATGTGGAACAACCTCTAGGGTTTGAGAAATGTCCTGTAGAACACACTCTGTTTGTTAAACATAAAGAAACTCATTGCATTCTTATTGTTAGTGTGTATGTAGATGACTTAATTGTCACTGGGAACAATCAAATACAGATCAACAAATTCAAGCAGTCTATGATGAATCTGTTTGCTATGTCTGACTTAGGCAAGATGAAATACTTTCTGGAAGTTGAAGTAATACAGACAGATGAAGGTATCTTCATTCATCAAATGAAATATGCCACAGAAATCTTAGCCAAATTTGGAATGGAACTTTGCAATTCAGTTAGTAGTCCAATAGTGACAGGCTGCAGACTTGTGAAAAATGAAGGAGGTAAAGCTAGTGATGCCAAAGCTTACAAACAAATGGTGGGAAGCTTAATGTACTTGTTGGTTACTAGACCTGGTGTAGTTTACTCTATTTGCTTAGTTGCTAGATTTATGGATAGGCCAATTGAGATGCATGTTGTTGCAGCTATAAAAAGAATAATGATGTATGTAAGAGGAACACCTGGTCTTGGCATACTGTATAAGAAAAGTGATGAGAGTTTGCAATTAAATGGTTGGACAAATTCAGACTATGCTGGGGATTTAGATGAGAAGCACTTCTGGCTATGTGTTCAAATTAGGCAATGGTGTTATACCTTGGTCCTCAAAGAAACAACCTATAGTGACATTATCAACAACAGAGGCAGAGTTTATAGCAGCTACTTCATGTTCTTCTCCTCCATTAAGTTGTCAAAGAATCCAATCTTACATGGAAGGTGTGCTCACATTGATGTGCGATTTCATTTCCTTAGAGATCTCACTAAGGATGGAATTATTGAATTGGTACATTGCAAATCTCAAGAACAACTAGCAGACATCATGACTAAGGCATTGAAATCTGCATTTGGGAAATTCCTGGCTTTTGATATGATGAAAGTAATGTGTTCATCAATCACTCTCACTGTAAGCTCACATTTGTACATGTCGTCAATCATCCTTCACTTTGTGGCAAGGAAATGTCTTCCTTATAAAATAGAACTTTTCAAAGTTCAGATCTTTAACCatattttctcttcaatttcaGGGGTGATATATTCACCGCAATTCAAAAAAAGTAGCACAAAACGCCAAGAGAAGAAACACAAACTGAAatcaaaatctcataaaatcagTGGTTGCTCAAATGTGTCAGAGAGGACAGCTACTAATGATTCTCCTAACAAGGCACCAAACAAGAATAACGATTCTTCAAATAAAAGATTGattattagaaaaaatcttcATAAAACTGATAGGAATTCTTCACCGATTCAGCCGTCAACAAAGATACAAGGAGGAGAAATTTCTCTTAATAATCATAGGAAATGGGAGAAAGATGTTGATCAGGAGGAAAATATTCAAAAACGTAAAAgaaggaggaagaagaaaaaacaaaaacaaaatgtagATCTTGATGATACTTCACGCCTCCAGAGAAGAACTAGGAATCTCTTAATCAGAATGAAGCAAGAGCAGAACCTTATCGATGCTTACTCCGGAGAAGGTTGGAAAGGTCAAAGTCGAGAGAAGATTAGGCCAGAAATGGAGCTACAAAGAGCAAAGAAGCAGATTTTGAAATGCAAGCTTAGTATCCGCGATGCCATTCGTCAGCTGGATTctcttagttcagttggtagcaTTGAAGGTTCTGTCATTGCTAATGATGGATCTGTTTCTCATGAACATATATTCTGTGCAAATTGCAAGATGAACGAAGCTTTGCCAGATAATGATATTATACTCTGCGATGGCACATGTAATCGTGCGTTTCACCAGAGATGTCTTGATCCTCCTTTGGATACTGAAAACATTCCTCCTGGAGACCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTGGAGGCAACAAATGCGCATCTCGGGACTCGTTTCTCCTTAGACAGTACTTGGCAGGATGTATTCAAGGAAGAGGCTGCTATTCCTGACGGCGATGATGCATTACTAAATCAAGAAGAAGATTGGCCGTCAGATGATCCTGAAGACGATGACTATAATCCAGAGGGGAAAGAAGACAGCCACGACGGCAACAACACAGAAGGAAATGATGAAAATGCATCTGATGATTCAAGTAGTTCTGGCAGTATGTGGTCTTTAAATGGAGAATGTTCTCTGTTAGATGAAGGCATCAACCTTGAATATTATTCTGTTAACGGCCACGTAGATTCTGATGAATCCGGGGAAATAGCATGCGGCCGTAGGCAGCGAAGAGCTGTTGACTACAAAAAACTTTATGATGAAATGTTTGGGAAGGATGCTCTTTCATATGAACAAGTGAGTGAAGACGAAGACTGGGGTCCTGGAAAAAGACGGCGAAGAGAAAAGGAGTCTGATGCAGTTAATACTCTTATGACTCTGCATGAAAGTGAAAATAAACATCCGAATAACGAGAAGAAAGATAGAATAAGAGGGGATTCTTCAGGCATAAAAAGACCTTGTTTCAGGATTCCACATGATGCAGTTGAGAAGCTTCGCCAGGTTTTTGCAGAGAATGAGCTTCCTCCAAAATCTGTGAAGGATGCCCTTTCAAAAGAATTGGGACTTGATGCTGCAAAGGTTAACAAATGGTTCAAAAATGCACGTTACTCGGCACTTAAAACGAGAAAGCATCGAGAAGGAGGACAACAGCCTCAGAGTTTCACTTCTAAGACCTCAAAGGATTCTACGTCACAACATATGCAGAAAGATGAGACGTTGAAACCGAAGGTCTCAAAAATTACCGTGGTTCATTCCCCGAAGAAGATTGAAAATGTCACTGACAAAGAGAAAACAAAGGCATCCAGCAGTCCCTTGAAGAAAAAGCGAAAGCGACCCGAAATACCTTCACCATTGAGTGAAAATGGCAACAAGGAATCAACGGAGGTCAATGATGATTTCAATGAGGATGTTAGCTTAATGAAACTgttgaaagaaaggaaaaagaaggtAAGTTTTGCATTCGAAGGAGACTCAGAGGCAGCCGAGATGGAATTCGAAAAACTCAGCAAAGTAAAGATGAAACTAGATAGATTGAAGCAAAAGTTAAGTCAAGTTCAAAATTACAGATCAAAGGGTTCAGATGAAGTTTATTTGAATGAGCCATCTATTATTTATGTGCCTGTAGCTGAGTTAAGGGAAAAGGTTAAATAG 5736 0.3726 MAENSNSSFLQPSVPKFDGYYDYWAMLMENLIRSKEFWPLIETGVTVAPPNATAEQLHIANESKLKDLLVKNFLFQAIDRTIMETILVRETSKDIYAMKQKYQGSTKVKRAQLQALRREFEVLEIKENESVNEYFARTLAIANKMTLHGERVEQSTDVATLTIDELQSTLIVQEQRMKYQKSGGEEQALKVSNGGRGFNTRGRGRGSSRGRGREETLLMTRTDQGSAIREENWYLDSRCSNHMIGNKEWLFEFDLSFKDSVRLGNDARMDVMGRGNGKIHVIINVYYIPGLSINLLSVGQLQQKNVTIIFKEDTCKAYHEEKGLIFSTQMSANRMFILTAQVIVPMCLQVSKEEQTQLWHNRYGHLSIKGLKLLTKLDMVKGLPELGEMEEKCISCLAGKQYRQAISKQAKWRATTKLQLIHSDICGPINPSSNGGKMYFITFTDDFSIKTWVYVLKEKAEAFEIFKNFKLLVENESGCVIQSLRTDRGGKFTSSAFNEFWSSQGIKRQLTTAYTPQQNGVSERKNKTLLNIIRSMLNCINVPKKFWPEALKWATYIMNRSPTVSVKNMTPEEAWSGIKPTVTHFRVFGCIAYVHVPHTNRRKLDNKSIVCVNLGISDESKAYKLYNPTYKKIMISKDVVFDESKAWDWENKQKDNNTNTHNEILVEDIAEDTTPVGNNGNPTPEEMSSGNDSTEAEEEQRVEDSEDDDLLGPRIRRVPGHLRDFVIGEEVEEEQELQNLAYYSNYGDPETYDEAYKSQVWNEAMDSEIQAIKANNTWELTDLPKGTKVIGVKWIFKTKYKENGQIDKHKARTVLAWAASKGWYVYQLDVKSAFLHGELAEDIYVEQPLGFEKCPVEHTLFVKHKETHCILIVSVYVDDLIVTGNNQIQINKFKQSMMNLFAMSDLGKMKYFLEVEVIQTDEGIFIHQMKYATEILAKFGMELCNSVSSPIVTGCRLVKNEGGKASDAKAYKQMVGSLMYLLVTRPGVVYSICLVARFMDRPIEMHVVAAIKRIMMYVRGTPGLGILYKKSDESLQLNGWTNSDYAGDLDEKHFWLCVQIRQWCYTLVLKETTYSDIINNRGRVYSSYFMFFSSIKLSKNPILHGRCAHIDVRFHFLRDLTKDGIIELVHCKSQEQLADIMTKALKSAFGKFLAFDMMKVMCSSITLTVSSHLYMSSIILHFVARKCLPYKIELFKVQIFNHIFSSISGVIYSPQFKKSSTKRQEKKHKLKSKSHKISGCSNVSERTATNDSPNKAPNKNNDSSNKRLIIRKNLHKTDRNSSPIQPSTKIQGGEISLNNHRKWEKDVDQEENIQKRKRRRKKKKQKQNVDLDDTSRLQRRTRNLLIRMKQEQNLIDAYSGEGWKGQSREKIRPEMELQRAKKQILKCKLSIRDAIRQLDSLSSVGSIEGSVIANDGSVSHEHIFCANCKMNEALPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTRFSLDSTWQDVFKEEAAIPDGDDALLNQEEDWPSDDPEDDDYNPEGKEDSHDGNNTEGNDENASDDSSSSGSMWSLNGECSLLDEGINLEYYSVNGHVDSDESGEIACGRRQRRAVDYKKLYDEMFGKDALSYEQVSEDEDWGPGKRRRREKESDAVNTLMTLHESENKHPNNEKKDRIRGDSSGIKRPCFRIPHDAVEKLRQVFAENELPPKSVKDALSKELGLDAAKVNKWFKNARYSALKTRKHREGGQQPQSFTSKTSKDSTSQHMQKDETLKPKVSKITVVHSPKKIENVTDKEKTKASSSPLKKKRKRPEIPSPLSENGNKESTEVNDDFNEDVSLMKLLKERKKKVSFAFEGDSEAAEMEFEKLSKVKMKLDRLKQKLSQVQNYRSKGSDEVYLNEPSIIYVPVAELREKVK 1911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02753 1911 Pfam Homeodomain 1687 1731 IPR001356 GO:0003677
Tsu08g02753 1911 CDD RNase_HI_RT_Ty1 1093 1147 - -
Tsu08g02753 1911 ProSiteProfiles 'Homeobox' domain profile. 1676 1736 IPR001356 GO:0003677
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1743 1757 - -
Tsu08g02753 1911 ProSiteProfiles Integrase catalytic domain profile. 413 579 IPR001584 GO:0015074
Tsu08g02753 1911 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 1214 1886 - -
Tsu08g02753 1911 ProSitePatterns Zinc finger PHD-type signature. 1425 1476 IPR019786 -
Tsu08g02753 1911 SUPERFAMILY Ribonuclease H-like 413 573 IPR012337 -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1536 1550 - -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 183 214 - -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1236 1264 - -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1221 1336 - -
Tsu08g02753 1911 ProSiteProfiles Zinc finger PHD-type profile. 1422 1479 IPR019787 -
Tsu08g02753 1911 Pfam GAG-pre-integrase domain 349 401 IPR025724 -
Tsu08g02753 1911 SMART PHD_3 1424 1477 IPR001965 -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 691 706 - -
Tsu08g02753 1911 Coils Coil 1856 1883 - -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1659 1677 - -
Tsu08g02753 1911 Coils Coil 1307 1327 - -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1654 1681 - -
Tsu08g02753 1911 Coils Coil 113 133 - -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 674 690 - -
Tsu08g02753 1911 Pfam PHD-finger 1424 1479 IPR019787 -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 668 714 - -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1758 1772 - -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1783 1810 - -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1734 1827 - -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1509 1565 - -
Tsu08g02753 1911 Pfam Integrase core domain 417 516 IPR001584 GO:0015074
Tsu08g02753 1911 CDD PHD_PRHA_like 1424 1476 IPR045876 -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1298 1315 - -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1516 1535 - -
Tsu08g02753 1911 CDD homeodomain 1679 1740 IPR001356 GO:0003677
Tsu08g02753 1911 SUPERFAMILY Homeodomain-like 1679 1742 IPR009057 -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1221 1235 - -
Tsu08g02753 1911 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1416 1473 IPR013083 -
Tsu08g02753 1911 SMART HOX_1 1678 1740 IPR001356 GO:0003677
Tsu08g02753 1911 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 849 951 IPR013103 -
Tsu08g02753 1911 SUPERFAMILY DNA/RNA polymerases 777 1041 IPR043502 -
Tsu08g02753 1911 Gene3D - 409 589 IPR036397 GO:0003676
Tsu08g02753 1911 Gene3D - 1678 1742 - -
Tsu08g02753 1911 PANTHER POLYCOMB PROTEIN PCL 1214 1886 - -
Tsu08g02753 1911 SUPERFAMILY FYVE/PHD zinc finger 1416 1481 IPR011011 -
Tsu08g02753 1911 MobiDBLite consensus disorder prediction 1279 1295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02753 Tsu-Chr8 42153649 42167247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02753 1324 1767 Homeobox Transcription Factor Family AT4G29940 56.987 2.83e-149 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Tsu08g02753 RVT_2 1.7e-21 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02753 - - gmx:100787118 913.679