Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02748 ATGACAGAGCGAATTAAGTTCAGCGTATTATGCAGCTTATTAACATGGACACAACGAACTAAATCACCGGCGAAGAAACGCGCAAAGTTCCGGAAGTTTCTAGATTCTTTCTGCACCGATCGTAACTACTTTCCTGCAATTCGTCTCATTCTTCCTAATCTCGATCGTGAACGTGGTTCCTATGGTCTCAAAGAATCTGTTCTCGCTACTTCACTTATCGATGCTATTGGTTTGTCCAAAGACTCTCACGACGCTCTTCGTCTTATCAATTGGCGGAAAGGTGGTTCAAAAACCGGTGCTAATGCCGGTAATTTCGCCCTTGTCGCCGCAGAGGTGCTGCAGCTTAGGCAAGGTACTGCTTCCGGTGGATTGACGATAAAGGAGTTGAATGACTTGCTTGATCAATTGTCTTCGAGTGAAAATAGGGCTGAGAAGACTTTGGTTCTTTCAACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTTAAAGATTTGAAGCTGGGATTTAGTGAAAAAAGCATTTTTCATGAATTCCATCCAGATGCTGAAGACTTGTTCAATGTTACGTGTGACTTAAAATTAGTTTGTGAAAAGCTAAGGGATCGGAACCAACGTCATAAGCGGCAGGATATTGAAATTGGAAAAGCTGTGCGTCCTCAGTTAGCTAAGAGAGTTGCTAACGCAGCTGAAGCATGGAAGAAGCTTCATGGTAAGGAAGTGGTTGCTGAGTGCAAATTTGATGGTGATCGCATTCAAATCCATAAAAATGGAACAGAGATACATTTCTTCTCAAGGAACTTTATTGATCATTCTGAATATGCACATGGCATGTCAGAAATCATAATTCAAAACATTCTTGTGGACAGATGCATACTTGATGGTGAAATGTTGGTCTGGGATACATCCTTGAATCATTTTGCTGAGTTTGGCTCTAATCAGGAAATAGGCATATTATATCCAAATGCCTTGACTCAAGAATGGTTAGACGTTGCATTTGACATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACATTGAAGGAGCGGCATGAGATTCTACGTAAAGTTGTGAAGCCATTGAAAGGTCGTTTGGAAATTTTACTACCTAATGGTGGTATCAACAGCCATCGGTCTTCTGGTGAACCATGTTGGTCATTTATTGCTCATAGTGCAGATGAAGTTGAAAGATTTTTCAAAGAAACCATTGAAAATAGAGATGAGGGAATTGTAGTAAAAGACCTCAGCTCCAAATGGGAACCTAGTGACCGTAGTGGAAAATGGCTAAAACTGAAGCCTGACTATGTTCAAGCTGGCTCTGATCTGGATGTACTTATCATAGGTGGCTACTATGGTTCCGGACGACGTGGGGGAGAGGTTGCTCAATTCTTGGTGGGTCTTGCAGAGCGTCCATCCCCAAATACAAATCCCAAACGATTTATCTCCTTTTGTAGAGTTGGTACTGGACTTTCTGATGATGAGCTTGAAGCAGTAGTAACCAAACTAAAACCTTACTTCAGAAAGTATCCAAAGAAGATGCAACCAAGTTTTTATCAAGTTACTCATCATTCCAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAAAAATCAATTATTCTGTCTATAACCAGTGAAATCCGAACTATTGAATCCGAGGTATTCGCTGCACCTTACTCTCTGAGATTTCCTCGGATTGACAGGGTGAGATATGATAAGGCTTGGCATGAATGCCTTGATGTACAATCATTTATAGAATTGGTGCAATCTAGCAACGGTACTACACAGAGGGATACAGAATATGGGAGCAAGGACAGTAAACCAAAGCGCATGAAATCCTCTGTAAGGGGAGAAAAGAAAAACGTGTCAATTGTTCCTTCTCATTTAAGTCAAACTGATGTTTCCAGTGTCAAGGGAGGTTCCTTAATGTTTTCAAATATGATGTTCTACTTTGTTAATGTCCCTCGATCTCATTCTCTCGAGTCGTTCCACAAATTAGTTGCTGAGAATGGTGGCACTTTCTCAATGAATTTGAATAACTCAGTAACCCATTGTGTTGCAGCAGACAGCAAagGGTTTAAATTTGAAGCTGCAAAACGTCGTGGTGATGTCATTCATTATACTTGGGTATTGGATTGCTGTGCACAAAAGAAGCTTATCCCCTTACAGTCGAAGTACTTCCTCTTCGTATCTGAACTGACCAAGAAGAAGTTACAAGAAGAAATTGACGAGTTCTCGGACTCTTACTACTTGGATCTTGATCTTCGAGACATAAAACAGCTCTTAAGCAATATTAATAGGTCAGAAGATGTCAGTACGGTCGACTATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTGTCTTTAATGGATGCTCCATTTATTTCCACACCACAATACCATCATTGAAAGAAGATTGGCAAATTTTATTGGAACTTTCTTCGAAGAGATTCAAGCTTGAAGTTCTCATGGGTGGTGGGAAAGTTACCTCTAATCTTAAATCTGCAACTCATGTGGTGGCCTTGTTTGTACCAAGTTTTCATACCAACTATGATGAAGAAATACATAATAGTTTTACTTCAGTTGAGAGAAAGCTTCTCTGTAGCAAGAAGTTGCATATAGTTAATTCCAAGTGGTTAGAAGACTGTTTGAATGGTTGCCAAAGATTATCAGAAGACACTTATAGCTTGAAGCCTTTTGGAATAGAAGAATCAACTGCTGAGGATTGTGAACATGACTTGGAGGCAGATGCTCATCTGGTTGAAGACAATGTAGAAGACCAAAATGAATCTTTCTCCAACAAGGTAAGTAAGCAGAGTAGTGCCAAAGCTGCTGAAGACAATTTGGCTTTAGCATCACAACAGAAGCGCGGCCCAAGGAAACGAGGAAGACCTGCGGGCACagGTACTGAAGTAGTAGAAAGTTCTGAACGAAACAAGAGAATCGAGCTAGAGGATTTCAAGGACAACCAACATGACAAAATGTTTGTTCCCGAAATTGAAATGAATGATGTGCGCAATGACCATAGTAGTCAGGGGACTGAGAAACTTGAAATTATGACTGATCCTGTGCAGGCAATGTTACTTGACATGATTCCTAGCCTTTCCATGAACAAAGTTGAACAACCTACGAATCGTCATGTTGAGGAAGAGAAGCCACCAGAAATCTCCAATGAAGAGCCTTCGactacaaagaaaaagaaagttagCGAAGAGAAGCCACCAGAAATCTCCAACGAAGAGCCTCCGACTACAAAGAATAAGAAAGTTAGCGAAGAGAAGCCACCAGAAATTTCCAACGAACAGCCTCCGactacaaagaaaaagaaagttagCTTAAAGGCCATTGCTGGTGGTCTGCTCAGTGATTGGTAG 3399 0.4025 MTERIKFSVLCSLLTWTQRTKSPAKKRAKFRKFLDSFCTDRNYFPAIRLILPNLDRERGSYGLKESVLATSLIDAIGLSKDSHDALRLINWRKGGSKTGANAGNFALVAAEVLQLRQGTASGGLTIKELNDLLDQLSSSENRAEKTLVLSTLIQKTNAQEMKWIIMIILKDLKLGFSEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEIGKAVRPQLAKRVANAAEAWKKLHGKEVVAECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHGMSEIIIQNILVDRCILDGEMLVWDTSLNHFAEFGSNQEIGILYPNALTQEWLDVAFDILYFGDTSVIHQTLKERHEILRKVVKPLKGRLEILLPNGGINSHRSSGEPCWSFIAHSADEVERFFKETIENRDEGIVVKDLSSKWEPSDRSGKWLKLKPDYVQAGSDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTNPKRFISFCRVGTGLSDDELEAVVTKLKPYFRKYPKKMQPSFYQVTHHSKERPDVWVDSPEKSIILSITSEIRTIESEVFAAPYSLRFPRIDRVRYDKAWHECLDVQSFIELVQSSNGTTQRDTEYGSKDSKPKRMKSSVRGEKKNVSIVPSHLSQTDVSSVKGGSLMFSNMMFYFVNVPRSHSLESFHKLVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRRGDVIHYTWVLDCCAQKKLIPLQSKYFLFVSELTKKKLQEEIDEFSDSYYLDLDLRDIKQLLSNINRSEDVSTVDYYRKKYCPKDKWSVFNGCSIYFHTTIPSLKEDWQILLELSSKRFKLEVLMGGGKVTSNLKSATHVVALFVPSFHTNYDEEIHNSFTSVERKLLCSKKLHIVNSKWLEDCLNGCQRLSEDTYSLKPFGIEESTAEDCEHDLEADAHLVEDNVEDQNESFSNKVSKQSSAKAAEDNLALASQQKRGPRKRGRPAGTGTEVVESSERNKRIELEDFKDNQHDKMFVPEIEMNDVRNDHSSQGTEKLEIMTDPVQAMLLDMIPSLSMNKVEQPTNRHVEEEKPPEISNEEPSTTKKKKVSEEKPPEISNEEPPTTKNKKVSEEKPPEISNEQPPTTKKKKVSLKAIAGGLLSDW 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02748 1132 ProSiteProfiles BRCT domain profile. 792 905 IPR001357 -
Tsu08g02748 1132 SUPERFAMILY Nucleic acid-binding proteins 447 596 IPR012340 -
Tsu08g02748 1132 MobiDBLite consensus disorder prediction 1044 1120 - -
Tsu08g02748 1132 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 441 - -
Tsu08g02748 1132 SUPERFAMILY BRCT domain 650 735 IPR036420 -
Tsu08g02748 1132 MobiDBLite consensus disorder prediction 938 956 - -
Tsu08g02748 1132 Pfam DNA ligase N terminus 7 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu08g02748 1132 Gene3D DNA ligase/mRNA capping enzyme 220 441 - -
Tsu08g02748 1132 SUPERFAMILY BRCT domain 786 906 IPR036420 -
Tsu08g02748 1132 MobiDBLite consensus disorder prediction 607 624 - -
Tsu08g02748 1132 Gene3D BRCT domain 660 775 IPR036420 -
Tsu08g02748 1132 Pfam BRCT domain, a BRCA1 C-terminus domain 649 731 IPR001357 -
Tsu08g02748 1132 Gene3D BRCT domain 792 905 IPR036420 -
Tsu08g02748 1132 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 3 208 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu08g02748 1132 MobiDBLite consensus disorder prediction 601 624 - -
Tsu08g02748 1132 CDD Adenylation_DNA_ligase_IV 214 444 IPR044125 GO:0005524
Tsu08g02748 1132 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu08g02748 1132 Pfam ATP dependent DNA ligase C terminal region 463 580 IPR012309 GO:0003910|GO:0006281|GO:0006310
Tsu08g02748 1132 MobiDBLite consensus disorder prediction 934 985 - -
Tsu08g02748 1132 Coils Coil 126 146 - -
Tsu08g02748 1132 ProSiteProfiles ATP-dependent DNA ligase family profile. 338 476 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu08g02748 1132 Pfam ATP dependent DNA ligase domain 226 439 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu08g02748 1132 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Tsu08g02748 1132 Gene3D - 442 601 IPR012340 -
Tsu08g02748 1132 PANTHER DNA LIGASE 4 2 906 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Tsu08g02748 1132 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 61 595 IPR000977 GO:0003910|GO:0005524|GO:0071897
Tsu08g02748 1132 MobiDBLite consensus disorder prediction 1051 1104 - -
Tsu08g02748 1132 CDD BRCT_DNA_ligase_IV_rpt1 650 736 - -
Tsu08g02748 1132 ProSiteProfiles BRCT domain profile. 646 734 IPR001357 -
Tsu08g02748 1132 SMART BRCT_7 794 895 IPR001357 -
Tsu08g02748 1132 SMART BRCT_7 648 724 IPR001357 -
Tsu08g02748 1132 ProSitePatterns ATP-dependent DNA ligase signature 2. 415 439 IPR016059 GO:0003909
Tsu08g02748 1132 CDD OBF_DNA_ligase_IV 446 588 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02748 214 597 Core DNA Replication Machinery Family AT1G08130 28.070 1.47e-29 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02748 K10777 - gmx:100816002 1664.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02748 08 42074510 42089201 Tsu08g02748 08 42074510 42089201 ECH