Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02747 ATGGAGAATAATGGGCAATACTGGGAGACCAACTTGTTCCTCCAAACCCAAGAACTTGACAGTTGGGGATTGGATGAAGCTTTTTCAGGGTACTATGATTCAAGCTCTCCTGATGGTGCAGCATCATCAGCAGTTTCATCTAAGAACATTGTTTCTGAAAGGAATAGAAGGAAGAAGCTTAATGAAAGACTCTTTGCACTTAGATCAGTGGTCCCCAACATTAGCAAGatgGATAAGGCTTCAATTATTAAGGATGCAATTGAGTACATACAACACTTACATGAGCAAGAGAAGATTATTCAAGCTGAGATAATGGAACTTGAATCAGGGATGCCAATTAATATTAATCCAAATTATGATTTCGATCAGGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAATTGTATGATTCTGTCAATTCAAGAAACTCTCCTATTGAAGTCCTTGAGGTTAATTGGCCCACTTTCTCTATCATTACATTTCTCTTGTTTTTCTAG 510 0.3804 MENNGQYWETNLFLQTQELDSWGLDEAFSGYYDSSSPDGAASSAVSSKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIEYIQHLHEQEKIIQAEIMELESGMPININPNYDFDQELPVLLRSKKKRTDQLYDSVNSRNSPIEVLEVNWPTFSIITFLLFF 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02747 169 Gene3D - 44 113 IPR036638 GO:0046983
Tsu08g02747 169 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 111 IPR036638 GO:0046983
Tsu08g02747 169 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 156 - -
Tsu08g02747 169 PANTHER TRANSCRIPTION FACTOR BHLH35 3 156 - -
Tsu08g02747 169 Pfam Helix-loop-helix DNA-binding domain 51 94 IPR011598 GO:0046983
Tsu08g02747 169 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
Tsu08g02747 169 SMART finulus 50 99 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02747 Tsu-Chr8 42064112 42065446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02747 7 157 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29930 56.364 2.28e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g02747 HLH 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02747 - - gmx:100817978 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02747 08 42064112 42065446 Tsu08g02747 08 42064112 42065446 ECH