Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02743 ATGACAAAAATTACTGAAATCACTGGTGGGAAGATTGATTTTCAATTGAGGGTTCGAGTGATTAACCTCTGGGCTTCACCCGATCGTAATAATCCAACTGAAGATGGAGCTATTAACATGATTTTCCTTGACAAGGATTGTGGAAAGATCCATGCAGTTGTTAGAAAGGACTTGATCGCTCAGTTCAAGGAGGACATTGAGGAAGGTTGTGCTTATGTGATTGAGAGATTCATGGTTGCTAAGAATGACTCTTCTTTCAAAACCACTTCCCATAAACATAAGCTCAATTTCATGTGTGGAACCAAAGTCTTTAAAGTAACTGCTAATGAAATACTGCCAAATCATTTTAACTTCATGCCTTTCCAAGATATCCTTGCATGCACCAAAGAAGATCAGTATCTTGACGTTATTGGACATGTTGTTGAGAAGAATGCTTTGAAGGAAACTGAGAAGAACGGACACATTCACAAGGTAATGGATGTCACTCTTGAAGACTTggaAGGGATTAGGATACATTGTACTCTTTGGGCTGACTTTGCTGTTAAAATGCAACAATTTATTGATGGCCATGACTCATCTTTACCTGTGATAATGGTCCTTCAATTAGGCAAACTTAAAAAGTACCTTGGTTCGATGGGAATTTCAAACTCTTTCTATGGGACAAAGTTGTTTCTGAATGCTGACATTCCTGAGGTCACTACCTACATAGAAAGAATGAATGCTGCCAATGTGGAACTAACTCAAGTGGTTAGTCAAATGAGTGGACCTGTGATCGTGACTATTGCTGATGATTTACTTCAGACACCAAGGATGACTATCGAGGATTTAATTGAGTCCAGTCAGGCAAGTATTCCTGGAACAACATCTTTTTTCGTTTACAATTATTTGGCCTGCACTAGATGTGCTTCAAGAATAACTTTCATCGCAGGTCAGCTCTACTGTGAGAAATGCAAGATGTCGCGCACTGCAATTCCTAGATTCAAAGTCCATCTTCAAGTTATAGATGATATTGGATCAATAACTTTTGTCATGTTTGATCGTGTTGTCTCCCAAGTTTTGGGTAGGACTGCCCAAGATCTTCTTGACACCATGAACAATGTTGAAGTGACTGATGCTAATTTATACCGTAACTGGCGTGGCTATACAGTCAAGAAGGTGACAGATGAGGAGGATGTAATCAACCGATTTGTTTCTCTCCATGGCTTAACTGTTGTCGTCAATAATGAAGAGCCCAGCTATGGCGACTTTGTCTGCAATTTGGGGGACGACACTCCATTGGTATCGCTTGAGGGCGGTGATTCAAGCAACAATGAAGAAATCATTGTCCATGGTGCTTTTAACACTCCAACTAGCAAGTTGGCTTCCAAGAAATCAGCTGATCTTGAAATCATCGGTGGTTCTGCTACTAAAGAGACTCCAAAGCCATCTAGGGAGTTGGTTCTCCCCAAATCACCAGATAACAAGCCAGGCAACAAGCCAGCTGGGAAAAGATCCGCCAATCCTGATGGATGTGATGATGCGGCTGTTAAGGAGACTAAGCTCTTTGCGTCTTTCCCTTTCTGCGTTTGGCCATTGCTTTGCAGCGGCATGCAACTATGTACTATCATGAAAGACGATGCTCTCGCAATCAAATTGTCAATTGTGAAAGATATAAGAGAAACCCTTGATGGATGTGATAATCCTTATGTTCGGACTTACACCACAGTTCGCAATACACTTCATTTGCATGAGACTCCCAATATTAAGTTGAGAATTTTAGGCAAGCGGGGGCGCGATGGTAGGAGATACAATCTTCCAACTGCATCGGAAGTTGCGGCTTTGATTGTTGGCGATTTCGATGCTGCTGACTTCGATAGGGATGTAATTGTCGAACTCCGGTCTGGTCTTCTACAACGCATATCTACATTTCAGCCATCCTACTGA 1923 0.415 MTKITEITGGKIDFQLRVRVINLWASPDRNNPTEDGAINMIFLDKDCGKIHAVVRKDLIAQFKEDIEEGCAYVIERFMVAKNDSSFKTTSHKHKLNFMCGTKVFKVTANEILPNHFNFMPFQDILACTKEDQYLDVIGHVVEKNALKETEKNGHIHKVMDVTLEDLEGIRIHCTLWADFAVKMQQFIDGHDSSLPVIMVLQLGKLKKYLGSMGISNSFYGTKLFLNADIPEVTTYIERMNAANVELTQVVSQMSGPVIVTIADDLLQTPRMTIEDLIESSQASIPGTTSFFVYNYLACTRCASRITFIAGQLYCEKCKMSRTAIPRFKVHLQVIDDIGSITFVMFDRVVSQVLGRTAQDLLDTMNNVEVTDANLYRNWRGYTVKKVTDEEDVINRFVSLHGLTVVVNNEEPSYGDFVCNLGDDTPLVSLEGGDSSNNEEIIVHGAFNTPTSKLASKKSADLEIIGGSATKETPKPSRELVLPKSPDNKPGNKPAGKRSANPDGCDDAAVKETKLFASFPFCVWPLLCSGMQLCTIMKDDALAIKLSIVKDIRETLDGCDNPYVRTYTTVRNTLHLHETPNIKLRILGKRGRDGRRYNLPTASEVAALIVGDFDAADFDRDVIVELRSGLLQRISTFQPSY 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02743 640 Pfam Domain of unknown function DUF223 40 128 IPR003871 -
Tsu08g02743 640 SUPERFAMILY Nucleic acid-binding proteins 269 371 IPR012340 -
Tsu08g02743 640 SUPERFAMILY Nucleic acid-binding proteins 2 105 IPR012340 -
Tsu08g02743 640 Gene3D - 266 392 IPR012340 -
Tsu08g02743 640 PANTHER BNAC07G49340D PROTEIN 45 396 - -
Tsu08g02743 640 SUPERFAMILY Nucleic acid-binding proteins 115 241 IPR012340 -
Tsu08g02743 640 Gene3D - 110 249 IPR012340 -
Tsu08g02743 640 Pfam Replication factor-A C terminal domain 294 368 IPR013955 -
Tsu08g02743 640 PANTHER REPLICATION FACTOR A 1, RFA1 45 396 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu08g02743 640 Gene3D - 1 105 IPR012340 -
Tsu08g02743 640 MobiDBLite consensus disorder prediction 464 503 - -
Tsu08g02743 640 CDD RPA1_DBD_A_like 16 103 - -
Tsu08g02743 640 CDD RPA1_DBD_B_like 135 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02743 Tsu-Chr8 42034102 42039957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02743 14 365 Core DNA Replication Machinery Family AT4G19130 21.833 3.00e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02743 - - mtr:MTR_1g105785 417.927