Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02708 ATGCGCGATGTTCTACGTGAATCCACGTTGGAAGGACATCATACCAAAGTCGTACAATTAGGACCTCGATATGGTTCTATTCCGTCCTCTCTTCCTTACCGGGAGGGCAATCTTCTCTTATGGCCAATTACCTATGACGAGATGACCGAGGTTGCGTGCGCCGCTTCGTCCTTGATTCCAGAGGAAGGAGATGGTAACATAAAATACggtccaatccatgaaaccacGCGAACCGCCGGTTTTCCGCTTTTCCCCCCGGTTTCTCGGTTCTTTTCCCGGTTTTTGGGTAGAGCGATTTTCATGCTTGAATGGACCGGACGCAGGCCCGGTTCGCGGTTGAACTGGCCGgaaaacaaacaagaaaatttgctgattttgtttcttttcatttcCTGTTATTTTCCGATGAGTTTTCTGAACGGTTCTTCACCTCGCCGGACTCCGCCGCCGGAGAATACTGATATTGAAGCTGGTCCGTTATCTCGCCGTTCTTCTGACGTTGATGACGACGGTAATTTTTCCGATCCGTTTGATATTGCTAGAACAAAGCACGCTTCTATTGATCGACTTCGCCGCTGGAGACAAGCGGCGCTTGTGCTGAATGCTTCCCGTCGATTTCGCTATACCTTGGActtgaagaaagaagaagagaagaagcaAATACTGAGAAAGATTAGAGCGCATGCTCAAGCCATTAGAGCAGCATATCGTTTCAAAGCAGCTGGGGGGCAAGCACCAAGACATGGGCAAGGGCCAGGGCATGTGCAAGTGGATGAAGCTATAAAACCTCCTTCAAGCTCTACTGGTGAATTTCCAATTGGACCAGAGCAACTTTCTTCGATTTCAAGGGAGCATGATATTGCTTCTTTGCAGCAACATGGAGGGGTTGCAGGGGTATCAAATTTATTGAAAACTGATTTAGAGAAGGGAATTGATGGCGATGATGCTGACTTGCTGAGACGGAGGAATGCATTTGGTTCCAACAATTACCCTCGAAAGAAAGGAAGAAGTTTTTGGATGTTTATGTGGGATGCTTGCAAGGACCTGACCTTGGTTATTTTAATGGTAGCTGCAGCAGCTTCATTGGCATTGGGGATAAAATCTGAGGGTATTAAGGAAGGTTGGTATGATGGGGGCAGCATTGCTTTTGCTGTTGttcttgttattgttgttaCAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAatgaagagaagagaaatatACATCTGGAGGTTGTTAGAGGTGGTAGAAGGGTTGAGATCTCAATATACGATCTTGTTGTCGGGGATGTTATACCTCTTAATATCGGTAACCAGGTCCCTGCTGATGGAATTGTGATCACTGGCCACTCTCTTTCAATTGATGAATCAAGCATGACAGGGGAGAGCAAAATTGTCCATAAGGATTCCAAGGATCCCTTTATGATGTCTGGTTGTAAGGTTGCAGATGGCAGTGGCACTATGCTGGTAACGGGTGTTGGAATTAATACTGAGTGGGGCCTTCTAATGGCTAGTATTTCAGAAGATACCGGTGAAGAAACACCTTTACAGGTCCGGTTGAATGGCGTAGCCACCTTCATTGGTATAGTCGGGCTCTCTGTGGCTGTTGTTGTCCTGATTGTGCTACTAGCCAGATATTTCTCTGGGCATACAAAGAATGCTGATGGGACACAACAATTTACAGCAGGCAAGACTAAAGTTGGGCATGCTGTTGATGGAGCAATTAAGATAATAACTGTTGCGGTCACCATTGTAGTTGTTGCAGTGCCTGAGGGGCTCCCACTTGCAGTCACTTTAACCCTGGCCTACTCGATGCGGAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGATCTGCTACAACCATATGCAGTGATAAGACTGGCACATTGACTATGAATCAGATGACTGTGGTTGAGGTTTATGCTGGGGGAAGTACTATTAACCCTCCTCACCAGTTGGAGAGCTCTCCTAAGCTACGCTCTCTACTCATTGAAGCTGTTGCACAGAACACTAATGGCAGTGTTTTTGTCCCTGAGGGTGCTAATGATATCGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTACATTGGGGAATTAAGGTTGGTATGAATTTTGCGACTGATCGGTCAGAATCATCAATTATACATGTCTTTCCATTTAACTCTGAGAAAAAAAGAGGCGGAGTTGCAATACAGACGGCTGATTCCGATGTTCATATACATTGGAAAGGTGCTGCTGAGATTGTTCTAGCTTGCTGTACAGGGTATATTGATGCAAATGACCAGTTGGTGGAGATGAGTGAGGAGAAGAAGGAGAAAGTTCCAGACAATGAGGAACAGCTTGCTCACTGGTCTTTGCCAGATGATGATCTTGTTTTACTAGCTATTGTTGGTATCAagGACCCTTGTCGACCTGGTGTCAAAGATTCAGTACAGCTTTGCCAAAAAGCCGGGGTTAAGGTAAAGATGGTCACAGGCGACAATGTGAAAACTGCAAAGGCAATTGCTGTGGAATGTGGAATACTTAGTTCACTTGCTGATGCTACTGACAGAACTGTAATTGAAGGGAAAACATTTAGAGCCTTGTCAGATTCAGAAAGAGAAGAAATTGCGGACTCGATATCGGTTATGGGAAGGTCATCTCCCAATGATAAACTATTGTTGGTACAAGCATTAAGGAGGAAGGGTCATGTTGTGGCTGTAACTGGGGATGGAACAAATGATGCTCCTGCACTTCACGAGGCGGATATTGGTCTTGCAATGGGTATTGCTGGTACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATTTTAGATGACAACTTTGCTTCAGTTGTGAAGGTTGTGAGATGGGGTCGGTCTGTTTATGCGAATATTCAGAAATTTATCCAGTTTCAGCTGACAGTCAATGTGGCAGCTCTTGTTATAAATGTTGTTGCTGCAGTTTCCTCTGGTGATGTTCCACTGAATGCAGTGCAgCTTCTCTGGGTGAATCTTATCATGGATACTCTGGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTGATGGATCGGACTCCTGTGGGTCGAAGGGAACCTCTCATAACAAATATTATGTGGAGGAATTTGCTGATACAGGCGATGTATCAAGTATGTGTCTTGCTTGTTCTCAATTTCCGAGGTATAAGCATATTGGGTCTGGAGCATGAACAGACTCAACATGCAATCTTAGTAAAGAACACTTTGATCTTCAATGCATTTGTTATCAGTCAGATCTTCAATGAATTTAATGCACGTAAGCCAGATGAATTCAACATTTTCAAAGGAGTCACCCAAAACTACCTCTTTATGGGGATAGTGGGATTCACTGTTGTGCTTCAGGTTATCATTGTTGAATTTCTTGGGAAATTCACTACAACTACTAGGCTTAATTGGCAGCAGTGGCTCATTTCTGTTGTTATTGGATTCATTGGTTGGCCTCTTGCTGTGGTTGGGAAATTGATACCCGTACCAGCAACTCCCATCAACAACGTTTTCTCTAGATTTCGAAGAACtgaaaaaaagaaggaaactGAGGCTTCTCAATAG 3618 0.4301 MRDVLRESTLEGHHTKVVQLGPRYGSIPSSLPYREGNLLLWPITYDEMTEVACAASSLIPEEGDGNIKYGPIHETTRTAGFPLFPPVSRFFSRFLGRAIFMLEWTGRRPGSRLNWPENKQENLLILFLFISCYFPMSFLNGSSPRRTPPPENTDIEAGPLSRRSSDVDDDGNFSDPFDIARTKHASIDRLRRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYRFKAAGGQAPRHGQGPGHVQVDEAIKPPSSSTGEFPIGPEQLSSISREHDIASLQQHGGVAGVSNLLKTDLEKGIDGDDADLLRRRNAFGSNNYPRKKGRSFWMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVVLVIVVTAVSDYKQSLQFRDLNEEKRNIHLEVVRGGRRVEISIYDLVVGDVIPLNIGNQVPADGIVITGHSLSIDESSMTGESKIVHKDSKDPFMMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLSVAVVVLIVLLARYFSGHTKNADGTQQFTAGKTKVGHAVDGAIKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEVYAGGSTINPPHQLESSPKLRSLLIEAVAQNTNGSVFVPEGANDIEVSGSPTEKAILHWGIKVGMNFATDRSESSIIHVFPFNSEKKRGGVAIQTADSDVHIHWKGAAEIVLACCTGYIDANDQLVEMSEEKKEKVPDNEEQLAHWSLPDDDLVLLAIVGIKDPCRPGVKDSVQLCQKAGVKVKMVTGDNVKTAKAIAVECGILSSLADATDRTVIEGKTFRALSDSEREEIADSISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVCVLLVLNFRGISILGLEHEQTQHAILVKNTLIFNAFVISQIFNEFNARKPDEFNIFKGVTQNYLFMGIVGFTVVLQVIIVEFLGKFTTTTRLNWQQWLISVVIGFIGWPLAVVGKLIPVPATPINNVFSRFRRTEKKKETEASQ 1205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02708 1205 PANTHER CATION TRANSPORTING ATPASE 164 786 - -
Tsu08g02708 1205 PANTHER CALCIUM-TRANSPORTING ATPASE 164 786 - -
Tsu08g02708 1205 PANTHER CALCIUM-TRANSPORTING ATPASE 784 1194 - -
Tsu08g02708 1205 PRINTS P-type cation-transporting ATPase superfamily signature 916 935 - -
Tsu08g02708 1205 PRINTS P-type cation-transporting ATPase superfamily signature 460 474 - -
Tsu08g02708 1205 PRINTS P-type cation-transporting ATPase superfamily signature 636 650 - -
Tsu08g02708 1205 PRINTS P-type cation-transporting ATPase superfamily signature 940 952 - -
Tsu08g02708 1205 PRINTS P-type cation-transporting ATPase superfamily signature 809 820 - -
Tsu08g02708 1205 PRINTS P-type cation-transporting ATPase superfamily signature 831 841 - -
Tsu08g02708 1205 PRINTS Sodium/potassium-transporting ATPase signature 379 399 - -
Tsu08g02708 1205 PRINTS Sodium/potassium-transporting ATPase signature 629 650 - -
Tsu08g02708 1205 PRINTS Sodium/potassium-transporting ATPase signature 754 772 - -
Tsu08g02708 1205 Pfam E1-E2 ATPase 414 614 - -
Tsu08g02708 1205 Gene3D - 298 488 - -
Tsu08g02708 1205 SFLD p-type atpase 618 968 IPR044492 -
Tsu08g02708 1205 Gene3D - 802 816 IPR023299 GO:0000166
Tsu08g02708 1205 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 642 821 IPR023299 GO:0000166
Tsu08g02708 1205 Gene3D - 962 1167 - -
Tsu08g02708 1205 Gene3D - 489 661 - -
Tsu08g02708 1205 Pfam Ca2+-ATPase N terminal autoinhibitory domain 175 217 IPR024750 GO:0005516
Tsu08g02708 1205 Pfam Cation transporter/ATPase, N-terminus 293 361 IPR004014 -
Tsu08g02708 1205 SFLD C1.7: P-type atpase like 618 968 - -
Tsu08g02708 1205 ProSitePatterns E1-E2 ATPases phosphorylation site. 638 644 IPR018303 -
Tsu08g02708 1205 Gene3D - 185 240 - -
Tsu08g02708 1205 MobiDBLite consensus disorder prediction 161 175 - -
Tsu08g02708 1205 SUPERFAMILY Calcium ATPase, transmembrane domain M 294 1180 IPR023298 -
Tsu08g02708 1205 SUPERFAMILY HAD-like 634 1021 IPR036412 -
Tsu08g02708 1205 Pfam Cation transporting ATPase, C-terminus 1001 1177 IPR006068 -
Tsu08g02708 1205 Pfam haloacid dehalogenase-like hydrolase 633 930 - -
Tsu08g02708 1205 SMART Cation_ATPase_N_a_2 292 366 IPR004014 -
Tsu08g02708 1205 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 576 658 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu08g02708 1205 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 882 996 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu08g02708 1205 PANTHER CATION TRANSPORTING ATPASE 784 1194 - -
Tsu08g02708 1205 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 284 1180 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Tsu08g02708 1205 SUPERFAMILY Calcium ATPase, transduction domain A 414 509 IPR008250 -
Tsu08g02708 1205 Gene3D - 817 961 IPR023214 -
Tsu08g02708 1205 MobiDBLite consensus disorder prediction 143 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02708 Tsu-Chr8 41349602 41368552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02708 136 1201 Primary Pumps ATPases AT5G57110 71.207 0.0 1537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02708 K01537 - gmx:100792945 1755.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02708 08 41349602 41368552 Tsu08g02708 08 41349602 41368552 ECH
Tsu04g04559 04 53207197 53216575 Tsu08g02708 08 41349602 41368552 PCT