Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02702 ATGGGACGTATGCACAGTCGCGGTAAAGGTATTTCAAGTTCAGCTCTTCCTTATAAGAGAGCACCATTAGGTTGGATTGGGATCTCCACTAAAGATGTTTATGACACCATCTGCAAGTTTGCAAAGAAAGGTTTAACTCCATCTCAAATTGGTGTTATTCTTCGCGACTCTCATGGAATTTCTCAGGTTAAGAATGTAACCGGCAACAAGATTTTGCGTATATTGAAGACTCATGGACTTGCTCCTGAGATTCTTGAAGATTTGTATCATTTCGATTAG 279 0.3978 MGRMHSRGKGISSSALPYKRAPLGWIGISTKDVYDTICKFAKKGLTPSQIGVILRDSHGISQVKNVTGNKILRILKTHGLAPEILEDLYHFD 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02702 92 Gene3D - 35 83 - -
Tsu08g02702 92 PANTHER RIBOSOMAL PROTEIN S15P/S13E 1 91 IPR023029 -
Tsu08g02702 92 SMART Ribosomal_S13_N_2 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
Tsu08g02702 92 PANTHER 40S RIBOSOMAL PROTEIN S13-1-RELATED 1 91 - -
Tsu08g02702 92 Pfam Ribosomal S13/S15 N-terminal domain 1 60 IPR012606 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02702 Tsu-Chr8 41205617 41205895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02702 1 91 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 78.022 3.64e-49 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02702 K02953 - nnu:104602244 157.147