Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02689 ATGGATGATTATCACAAATCTTTCACGTTGGATCTTAATCTTGGACTTGGATTAGGATCTTATGTGCAAAATAATGTGAACAAATCATTGGCTAGTTCAAAAAATGAATTAACCATTGGTTTGAATCATGATAATAAGGCAAATGAATTGAGTTTGAAGAGAGTgcatgaagaacaagaagcacacacaattgaagaagaaattgcTATTGACACCACCAATGATAATAATGGGTGTACAAAGAAATTGAGGCTTACTAAGGAGCAATCAACCATGCTTGAGGATGCTTTCAAGCTTCATAACACCATTAACACcGCTCAAAAACGGGCACTTgctgaaaaattgaatttaaagcAAAGACAGGTTGAAGTTTGGTTCCAGAACAGAAGAGCAAGGACTAAGCTGAAACAAACTGAGGTAAACTACATGTTCTTGAAGAAATGTCATGATAAATTAAGTGAGGAGAATCTTATCTTGAAGAAAGAATTAGAAGAATTGCGTGCATTAAAAGTTGGACCATCAAACATTACTCAAGCTTCAAAATGGACCATTTGTTCATCATGCAAGAAAATATGGAAGCCAAATGAAGGACACaacaatgaagatgatgatgatgatgtggtTAGAAAGAGTAGCTACAGCACCATAGAGATAGATTAG 660 0.303 MDDYHKSFTLDLNLGLGLGSYVQNNVNKSLASSKNELTIGLNHDNKANELSLKRVHEEQEAHTIEEEIAIDTTNDNNGCTKKLRLTKEQSTMLEDAFKLHNTINTAQKRALAEKLNLKQRQVEVWFQNRRARTKLKQTEVNYMFLKKCHDKLSEENLILKKELEELRALKVGPSNITQASKWTICSSCKKIWKPNEGHNNEDDDDDVVRKSSYSTIEID 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02689 219 SUPERFAMILY Homeodomain-like 73 137 IPR009057 -
Tsu08g02689 219 PANTHER - 32 196 - -
Tsu08g02689 219 SMART halz 136 179 IPR003106 GO:0006355|GO:0043565
Tsu08g02689 219 Coils Coil 47 67 - -
Tsu08g02689 219 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 32 196 - -
Tsu08g02689 219 SMART HOX_1 78 140 IPR001356 GO:0003677
Tsu08g02689 219 ProSitePatterns 'Homeobox' domain signature. 111 134 IPR017970 GO:0000981|GO:0006355
Tsu08g02689 219 Gene3D - 86 133 - -
Tsu08g02689 219 CDD homeodomain 81 137 IPR001356 GO:0003677
Tsu08g02689 219 Coils Coil 149 169 - -
Tsu08g02689 219 ProSiteProfiles 'Homeobox' domain profile. 76 136 IPR001356 GO:0003677
Tsu08g02689 219 Pfam Homeodomain 82 134 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02689 Tsu-Chr8 41038683 41040627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02689 79 201 Homeobox Transcription Factor Family AT4G17460 57.937 1.12e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Tsu08g02689 Homeodomain 1.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02689 K09338 - gmx:100790522 162.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04544 04 53108155 53109985 Tsu08g02689 08 41038683 41040627 PCT