Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02681 ATGAGAAACACGGTTCCACATGATGTTGGACCCAAAGAGATGATGAATATGATATTTCCGAATCCATCCACACAACATTCATCAGGGTCCATGGAGTGGTTTAGTAGGAGCCTTCGGTCACTTAGTTACTTTGACTACCAAACATTGAGGAAGGCAACTAATAACTTTGTTCATGGTAATCTTCTTGGAAGTGGTGGCTTTGGTCCTGTCTATCAGGGAAAGTTGGAAGATGGAAGGATGATTGCTGTTAAGGTATTGTCTGTTAACAAATCCCAAcaaggagaaaaagaatttttggCTGAGGTGAAATTGATCACAAGTATTCAGCACAAAAATTTGGTTCAACTTCTTGGAAGTTGTATAGATGGACCTCAAAGGTTACTTGTTTATGAATACATGAAGAATCGAAGTTTGGACCTCTTCATATATGGAAACAGTGTTCGATTTTTAAATTGGAGCACTAGGTTCCAAATTATACTTGGAGTAGCACGAGGACTTCAATACCTTCATGAAGATTCACACTTAAGAATCGTTCATCGAGATATCAAAGCAAGTAACATTCTTCTTGATGAAAAATTCTTACCAAGGATCGGAGACTTTGGGCTAGCGAGGTTTTTCCCCGAAGATCAAGTTTATCTTAGCACACAATTTGCAGGAACATTAGGCTATACAGCTCCTGAATATGCTCTTAGAGGAGAATTGTCAATAAAGGCAgatatatatagttttggagTTCTACTTCTTGAAATTATTTGTTGCAGGAAAAACACAGATCATATTTTACCACCAGAAATACAGTATCTTCCTGAATATGCATGGAAGTTGTACGAGAAATCAAATTTATTGAATCTTGTAGATCCAAAGTTGAGAAAAGATGGATTTGTAGAAAAGGATGTTTTGCAAGCAACCCATGTAGCTCTCTTATGCCTTCAACCTCATGCACATTTGAGACCACCCATGTCAGAAATTGTAGCATTGTTGACATTCAAAATTGAAATGGTTACAACACCAATGAGGCCAACATTCCTCGATCGAAGGCCCAAAAAGGATGAAGATAACCATTCTTTTGAAGGACCATCTTTGCCAAGCAACtga 1095 0.3671 MRNTVPHDVGPKEMMNMIFPNPSTQHSSGSMEWFSRSLRSLSYFDYQTLRKATNNFVHGNLLGSGGFGPVYQGKLEDGRMIAVKVLSVNKSQQGEKEFLAEVKLITSIQHKNLVQLLGSCIDGPQRLLVYEYMKNRSLDLFIYGNSVRFLNWSTRFQIILGVARGLQYLHEDSHLRIVHRDIKASNILLDEKFLPRIGDFGLARFFPEDQVYLSTQFAGTLGYTAPEYALRGELSIKADIYSFGVLLLEIICCRKNTDHILPPEIQYLPEYAWKLYEKSNLLNLVDPKLRKDGFVEKDVLQATHVALLCLQPHAHLRPPMSEIVALLTFKIEMVTTPMRPTFLDRRPKKDEDNHSFEGPSLPSN 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02681 364 ProSiteProfiles Protein kinase domain profile. 56 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02681 364 SMART serkin_6 56 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02681 364 Gene3D Transferase(Phosphotransferase) domain 1 133 336 - -
Tsu08g02681 364 MobiDBLite consensus disorder prediction 341 364 - -
Tsu08g02681 364 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 340 - -
Tsu08g02681 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Tsu08g02681 364 PANTHER RECEPTOR-LIKE KINASE 36 340 - -
Tsu08g02681 364 CDD STKc_IRAK 62 328 - -
Tsu08g02681 364 Pfam Protein tyrosine and serine/threonine kinase 59 325 IPR001245 GO:0004672|GO:0006468
Tsu08g02681 364 Gene3D Phosphorylase Kinase; domain 1 28 132 - -
Tsu08g02681 364 SUPERFAMILY Protein kinase-like (PK-like) 30 330 IPR011009 -
Tsu08g02681 364 MobiDBLite consensus disorder prediction 342 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02681 Tsu-Chr8 40896733 40899978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02681 44 356 Receptor kinase-like Gene Family AT1G56120 47.604 9.38e-98 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu08g02681 PK_Tyr_Ser-Thr 1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02681 - - cam:101498319 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04542 04 53080178 53082660 Tsu08g02681 08 40896733 40899978 PCT