Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02673 ATGACACCAACTTATCGTTATTCACTATCTTCTTCTCCTATGTCTTCTTTTGATCTTAATAATGAATTAGATCACAATCAtccctcttcttcttcatcttcttattCCATACTCTTCAACCAAAATCAAGATCATGGAAGATCTTATTCTTTGGAACCAAACCACATACAAAGTGATGATCATTTAGAGGTTGAGAAATTTGTTCCTTCTAGTGGATCATGGGATCATCAAGAAATGAAGAAAGATGTTAATGAAGATTATAAAGCTGAGGATAGTACTTCATTGAAATGGATGCCATCAAAGAAGAGAATTATTCATAAAATGTTGGAAGATCAAAGGAGTTCTAAGAAcaagtttgaaaaagaaaagctaTTAGGATTTGATAATAGTAGCAACAACAATTCTTCAAACAACAATATCACTATTAGGGTTTGTAGTGATTGCCACACAACTAAGACCCCTCTCTGGAGAAGTGGACCAACAGGTCCTAAGTCACTATGCAATGCCTGCGGTATTCGACAAAGAAAAGCGCGACGCGCCCTTGCAGCGGCAGCATCTGCAAATGGTGAAACTCTTGTGGTGGCTGAGAAACCTAATATGAAGGGAAAGAAGTTGcaaattaaaaggaaaaggTCAAAAATTGATCAATGTGCACCACATTTGGAaagcaagggtaaaattggaaacaaGGGTACACGTTTTGAAGATTTAATAACAAGCTTAAGCAAAAATTTGGCTTCCTATCAAGTTTTCCCTCAAGATGACAAAGAGGCTGCAATTCTACTCATGGCTTTATCTTCTGGCTTACTTCATTGA 816 0.3321 MTPTYRYSLSSSPMSSFDLNNELDHNHPSSSSSSYSILFNQNQDHGRSYSLEPNHIQSDDHLEVEKFVPSSGSWDHQEMKKDVNEDYKAEDSTSLKWMPSKKRIIHKMLEDQRSSKNKFEKEKLLGFDNSSNNNSSNNNITIRVCSDCHTTKTPLWRSGPTGPKSLCNACGIRQRKARRALAAAASANGETLVVAEKPNMKGKKLQIKRKRSKIDQCAPHLESKGKIGNKGTRFEDLITSLSKNLASYQVFPQDDKEAAILLMALSSGLLH 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02673 271 SMART GATA_3 139 190 IPR000679 GO:0006355|GO:0043565
Tsu08g02673 271 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 271 - -
Tsu08g02673 271 Gene3D - 141 217 IPR013088 GO:0006355|GO:0008270
Tsu08g02673 271 MobiDBLite consensus disorder prediction 1 36 - -
Tsu08g02673 271 ProSiteProfiles GATA-type zinc finger domain profile. 143 175 IPR000679 GO:0006355|GO:0043565
Tsu08g02673 271 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 141 178 - -
Tsu08g02673 271 Pfam GATA zinc finger 145 178 IPR000679 GO:0006355|GO:0043565
Tsu08g02673 271 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 271 - -
Tsu08g02673 271 ProSitePatterns GATA-type zinc finger domain. 145 170 IPR000679 GO:0006355|GO:0043565
Tsu08g02673 271 CDD ZnF_GATA 144 172 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02673 Tsu-Chr8 40761525 40764103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02673 92 271 C2C2-Gata Transcription Factor Family AT4G26150 41.905 1.37e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu08g02673 GATA 4.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02673 - - lang:109328146 206.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04537 04 53053048 53055289 Tsu08g02673 08 40761525 40764103 PCT