Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02671 ATGGGTATGGAGTACGAGAAAATACACGCATGCCCTAATGATTGCATATTGTACCGAAATGAGTATCAAGGGTTGAAGAATTGTCCCACATGCGGGCAATCACGTTTCAAAGTGAAGGATGGTGATGTGGTATCTTCCAATAATTCCAAGAAAGTTGATGATTTGTATCCGGATTTTGGTAATGAGGCAAGAAACTTTAGGCTTGGACTTGCTACAGATGGAATGAATCCATATGGAAACTTAAGTAGTAACCATAGTTCATGGCCTGTTCTATTAATTATCTACAATTTATCTCCTTCGATTTGCATGAAACGGAAATATATTATGTTATCTATGATGATTTCGGGCCCAAGGCAGCTAGGAAATGATATAGATGTTTATCTAAGTCCTTTGATTGAAGACTTGAGAATGCTATGGGAGGAAGGTGTGGATGTGCTTGATGCGTATTCCAACGAGAATTTCAAGATGCGTGCAATGTTATTTTGCACAATCAATGATTTTCCTGCATATGGGAATTTGTCCGGTTATACTGTTAAAGGACATAAGGCATGCCCTATATTAGCTATTCGTGGCATATTGCCTAAAAAGGTTAGAGGTGTCTTAACTAGGTTGTGCTTTTTCTTCAATGCTATTTGTAGAAAAGTCATCGATCCTAAAAAATTAGATGAGTTGGAAAATGAAGCTGTTGTTATCTTGTGCCAACTGGAGATGTATTTTCCTCCTTCTTTTTTTGATATCATGGTTCACTTAATTGTTCACCTAGTGAGGGAGATTAGATTGTGTGGTCCTGTTTATTTGAGGTGGATGTATCCAGTTGAGCGATACATGAAGATCTTAAAAGGGTATATGAAGAATCAAAACCGTCCTGAAGCATCTATTGTTGAGAAATACATTGCAGAAGAAGCTATTGAGTTTTGTTCTGACTACATGTCAGAAGCAAATGCTATAGGAATTCCTAAGTCTCGTCATGGTGGTAGATGTGGAGGTATACGAGGTTTAAAACTTCAGCGCATTGGACGAGAGGAAGCCATTTTGTTTACTGTGATTTTGTCTGTTGAAGCAGATCTAAGGAATATTAAAAAGAACTATGATATGTGGAAGGCTACCGGAGGGGATTATTCAGTTGAATCAGCTGAGTCCATAAGGCCTTTATGCACCCTCATTGATGTTGGTCTTGTTAAGACCACAACCGAAAACCGCGTCTTTGGTGCACTCAAGGGAGCTTTGGATGGAGGTTTGGATGGAGTTTGA 1251 0.3885 MGMEYEKIHACPNDCILYRNEYQGLKNCPTCGQSRFKVKDGDVVSSNNSKKVDDLYPDFGNEARNFRLGLATDGMNPYGNLSSNHSSWPVLLIIYNLSPSICMKRKYIMLSMMISGPRQLGNDIDVYLSPLIEDLRMLWEEGVDVLDAYSNENFKMRAMLFCTINDFPAYGNLSGYTVKGHKACPILAIRGILPKKVRGVLTRLCFFFNAICRKVIDPKKLDELENEAVVILCQLEMYFPPSFFDIMVHLIVHLVREIRLCGPVYLRWMYPVERYMKILKGYMKNQNRPEASIVEKYIAEEAIEFCSDYMSEANAIGIPKSRHGGRCGGIRGLKLQRIGREEAILFTVILSVEADLRNIKKNYDMWKATGGDYSVESAESIRPLCTLIDVGLVKTTTENRVFGALKGALDGGLDGV 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02671 416 Pfam Domain of unknown function (DUF4218) 211 314 IPR025452 -
Tsu08g02671 416 SUPERFAMILY Translational machinery components 361 414 - -
Tsu08g02671 416 PANTHER UNCHARACTERIZED 2 39 - -
Tsu08g02671 416 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 359 414 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu08g02671 416 PANTHER UNCHARACTERIZED 50 186 - -
Tsu08g02671 416 PRINTS Ribosomal protein L5 signature 407 416 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu08g02671 416 PRINTS Ribosomal protein L5 signature 387 406 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu08g02671 416 Gene3D - 343 415 - -
Tsu08g02671 416 Pfam Transposase family tnp2 46 186 IPR004242 -
Tsu08g02671 416 PANTHER - 50 186 - -
Tsu08g02671 416 PANTHER - 2 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02671 Tsu-Chr8 40716103 40720031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02671 367 414 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 70.833 4.56e-15 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02671 - - gsj:114371563 369.007