Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02636 ATGTACCATATGGAAGGTGTATTTTCTCTTCCTATAGCCGTCAGAACTGAATTTATTCATTCTCTAATGCAATCACTTGGAGGATGTTGTTACATTTGTCTTTGGGCATATGATACAATATTAACAaaTCGTTTGTCATTCTTGGATGGTTTCTACAATGTGCTAAACAATCAAATTCCAAGTTCTTCTTTGGGAAGTGTAGCACAACAACTTTTTAATCAATACAGAATTTTATCATTTGATGTCAATGATGACTGCATTCCGGGTCTAGCTTTTAGGAATCGACGTCCATACCTCGAGCTGCAACAATTGGAACTTCTTGCACTGTCTACAACAGAAATACAGACACAATTCTATCGGGAAGCAAGAATTAAGACTGCTGTTTTCATGGGGTGCAACAAAGGAGAAATTGAGCTTGGTTTCTTAAATATGTCTCAAGTTGATATTCAAACAGCACTTAGTAGTTTATTTCCTGAAGATTTTTCAAGACAAACACAAcaaattattgatcaaaatacTAATccaccatcatcatcttcatcttcaatgaGATCACTATCAGCAGCAGGTAGTCCTGAATATTCATCTCTCATATTCAACAATATTCCAACTGGAACTTCTCCATCTCATTTTCCACCTGATCAAACACATCTTGGAGGATCAATAATCCCTCCAATGAGACCTGTTTCAAACACACTACCTCTACAACTCCAACAATTTCCTCAAATATCACAAACACAATTATTCTCTACAACACAAATGAATCATCAAAATGCAATAATGAGAGCAATACAAAATGTTCTATCTACACCCCCTTCTCAACAAAACTTGCTTTATGGAGTTCATCAAGAAGCTAGTGCATTTGGAAGGTATAGAAATGATAGAAGTCCTAATATAGGGTCAAATTTTAGAAGACAAAGTTTGATGAAGAGATCATTTTCATTCTTTAGAAACTTGAATTTGATGAGATTGAGAGATCGGAGTACTCAAGCGATGCGTCCTTCGAGTAATCAACTTCATCATATGATATCTGAGCGACGGAGGCGCGAGAAACTTAATGAGAATTTTCAAGCACTGAGAGCATTGCTCCCTCAAGGAACTAAGAAAGACAAAGCATCAATACTAATAACAGCAAAGGAGACATTAAGGTCCTTGATGGCTGAAATAGACAAACTTAGCAAAAGAAATCAGGAGTTGATGTCACAACAATCACCAGCAGCCAATAaagaatcaacaaaaacaacagaAATTATCAAATTATCATCAGATGAAAGATTAAACGTTCAAATTTCACACGTACCAGAATTAAGTTCATTAGAAGACAAGCCAATGGTAGTAGATTTACAAGTGAATGTCATGGGACAAATTTCTCAAGTTGATATGTTGATTAGATTATTGGAATTCTTAAATCAAGTTCGACATGTTAACTTGATTTCAATGGATGcaacaaatacaaataattcACAAGGGGATAATTCCATTCATCAAATTACATTCAGGCTAAGGATTACTCAGGAATGTGAATGGGACGAGGAAGCCTTCCAGGAAGCAGTGAGAAGAGTGGTTGCTGACTTGATGCATTCTCAAGTGGACTAA 1596 0.3427 MYHMEGVFSLPIAVRTEFIHSLMQSLGGCCYICLWAYDTILTNRLSFLDGFYNVLNNQIPSSSLGSVAQQLFNQYRILSFDVNDDCIPGLAFRNRRPYLELQQLELLALSTTEIQTQFYREARIKTAVFMGCNKGEIELGFLNMSQVDIQTALSSLFPEDFSRQTQQIIDQNTNPPSSSSSSMRSLSAAGSPEYSSLIFNNIPTGTSPSHFPPDQTHLGGSIIPPMRPVSNTLPLQLQQFPQISQTQLFSTTQMNHQNAIMRAIQNVLSTPPSQQNLLYGVHQEASAFGRYRNDRSPNIGSNFRRQSLMKRSFSFFRNLNLMRLRDRSTQAMRPSSNQLHHMISERRRREKLNENFQALRALLPQGTKKDKASILITAKETLRSLMAEIDKLSKRNQELMSQQSPAANKESTKTTEIIKLSSDERLNVQISHVPELSSLEDKPMVVDLQVNVMGQISQVDMLIRLLEFLNQVRHVNLISMDATNTNNSQGDNSIHQITFRLRITQECEWDEEAFQEAVRRVVADLMHSQVD 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02636 531 SMART finulus 342 391 IPR011598 GO:0046983
Tsu08g02636 531 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 385 IPR011598 GO:0046983
Tsu08g02636 531 CDD bHLH_AtbHLH_like 341 393 IPR045239 -
Tsu08g02636 531 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 4 525 IPR044658 -
Tsu08g02636 531 Gene3D - 335 409 IPR036638 GO:0046983
Tsu08g02636 531 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 4 525 - -
Tsu08g02636 531 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 404 IPR036638 GO:0046983
Tsu08g02636 531 Coils Coil 342 362 - -
Tsu08g02636 531 Coils Coil 375 402 - -
Tsu08g02636 531 Pfam Helix-loop-helix DNA-binding domain 340 385 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02636 15 527 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.556 1.68e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g02636 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02636 - - gmx:100807098 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02636 08 39784268 39790840 Tsu08g02636 08 39784268 39790840 ECH