Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02625 ATGTACTTAAGAACTCGATTCTGTGATTCAAACGAAATGAGTAACAGCAGTGGCATATGCTGCATAACTAACAATGCAGAAGCCAATTCAAGTATTACAGATAACACAATCACACCACTAAACCTTCTCTCAGACAATCTAGCTTCAATCCTCAATGTTGCAGACTTTGACTTCTTTTCCGATGCAAAGATCATCACCGGAGACCGTAAACAAGTTTCGGTGCACCGGTGTATTCTGTCGGCGAGGAGTAGTTTCTTTAAGAACATGTTTGGTGGAACAAAAGAGAAAGTGACAAAGAGGATTGATTTGAAGGAAGTTGCTAAGGATTATGATGTTGGGTTTGATGCACTTAATGTTGTGCTGCGTTATTTGTATAGTGGGAAAATTGAACATAaaggtgtttgtgtttgtgtggATGATGATTGTTCTCATTTTGGGTGTTGGCCTGTTGTTGATTTCATGCTTCAACTTCTTTATGCTTCTTTCACTTTCCAAATATCTGAATTGATTGCTCTTTATCAGGATCATCTACTAGAAATTCTTGACAAGATTGCAATAGATGACATATTAGAGGTTCTTTCTGTAGCAAATATATGTGGTAAAACATGTGATAAACTGCTTAGAAGATGCACAGAGATAACTGTTAATTCCAATGTTGATATCACTACTCTTGAAAAATCACTTCCTCAACCTTTATCGAAACAAATAATACACAAACGAAACGAACTAGGTTTAAACATATCCGAAAGCTTAAATCTTCTACACAAACATGTTAACAGAATACATAGAGCTTTAGATTCAGATGACGTAGAATTAGTGAGGTTACTTTTGAAAGAAGGACACACTACTCTAGATGAGGCTCATGCACTTCACTATGCAGTTGCATATTGTGATGTGAAAACTACTACTGAGCTTCTTGATCTTGGACTTGCTGAtgtaaatcataaaaacaaTAGGGGTTATAGCGTGTTACATGTCGCTGCTACAAGAAAAGAACCGAAGATTATTGCGTCTCTTTTAACAAAAGGAGCTCAGCCTTCTGAACTCACTTTAGATGGTAGAAAAGCTCTCCAGATTTCGAAACGTTGTACGAAAGCTGTGAATTACTATAAATTTACGGAGGAAGGAAATATTTCGTCGAATGATCGTTTGTGTATAGAGATATTGGAGCAAGCTGAGAGACGGGATCCTTTACTTGGGGAGGCTTCTCTTTCTCTTGCTATGGCAGGGGACGATTTGCGAATGAAATTGTTGTACCTAGAAAATCGAGTTGGACTTGCAAAACTGTTGTTTCCCATGGAAGCCAAGGTTGTGTTGGATATTACTCAAATTGATGGCACATCTGAATTTACTCCAAATTTGGGTGGTTGCCAGAGAACAACTATGGACCTAAATGAGGCACCTTTCAAAATAAAAGAGGAGCATCTAATTAGGATGAAAGCACTGTCTAGATCAGTGGAGTTGGGGAAACGCTTCTTCCCACGTTGCTCGGCAGTGTTGAACAAGATAATGGATGCCGATGACCTATCGCAACTTGCGTGTATGGGTAATGACAGCCCCGAAGATCGACAAGCGAAGCGAAGACGGTACGGGGAGCTTCAAGAAGTTCTTAATAAAGTATTCCATGAAGACAAAGAGGAGTATGATAGATCTgccatttcttcatcatcctcatccACATCAATAGGAATTGCAAGGCCTAATAATAGTAAGATAGCAATGAAGAATTAG 1731 0.3744 MYLRTRFCDSNEMSNSSGICCITNNAEANSSITDNTITPLNLLSDNLASILNVADFDFFSDAKIITGDRKQVSVHRCILSARSSFFKNMFGGTKEKVTKRIDLKEVAKDYDVGFDALNVVLRYLYSGKIEHKGVCVCVDDDCSHFGCWPVVDFMLQLLYASFTFQISELIALYQDHLLEILDKIAIDDILEVLSVANICGKTCDKLLRRCTEITVNSNVDITTLEKSLPQPLSKQIIHKRNELGLNISESLNLLHKHVNRIHRALDSDDVELVRLLLKEGHTTLDEAHALHYAVAYCDVKTTTELLDLGLADVNHKNNRGYSVLHVAATRKEPKIIASLLTKGAQPSELTLDGRKALQISKRCTKAVNYYKFTEEGNISSNDRLCIEILEQAERRDPLLGEASLSLAMAGDDLRMKLLYLENRVGLAKLLFPMEAKVVLDITQIDGTSEFTPNLGGCQRTTMDLNEAPFKIKEEHLIRMKALSRSVELGKRFFPRCSAVLNKIMDADDLSQLACMGNDSPEDRQAKRRRYGELQEVLNKVFHEDKEEYDRSAISSSSSSTSIGIARPNNSKIAMKN 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02625 576 SUPERFAMILY Ankyrin repeat 250 362 IPR036770 -
Tsu08g02625 576 PANTHER REGULATORY PROTEIN NPR2 4 571 - -
Tsu08g02625 576 Pfam BTB/POZ domain 57 177 IPR000210 GO:0005515
Tsu08g02625 576 ProSiteProfiles Ankyrin repeat region circular profile. 319 345 - -
Tsu08g02625 576 Pfam Ankyrin repeats (3 copies) 262 346 IPR002110 GO:0005515
Tsu08g02625 576 ProSiteProfiles Ankyrin repeat profile. 319 351 IPR002110 GO:0005515
Tsu08g02625 576 SMART ANK_2a 285 315 IPR002110 GO:0005515
Tsu08g02625 576 SMART ANK_2a 256 284 IPR002110 GO:0005515
Tsu08g02625 576 SMART ANK_2a 319 348 IPR002110 GO:0005515
Tsu08g02625 576 SMART BTB_4 60 181 IPR000210 GO:0005515
Tsu08g02625 576 Pfam NPR1/NIM1 like defence protein C terminal 361 560 IPR021094 -
Tsu08g02625 576 MobiDBLite consensus disorder prediction 548 576 - -
Tsu08g02625 576 Gene3D Potassium Channel Kv1.1; Chain A 24 209 IPR011333 -
Tsu08g02625 576 Gene3D - 210 448 IPR036770 -
Tsu08g02625 576 SUPERFAMILY POZ domain 54 178 IPR011333 -
Tsu08g02625 576 MobiDBLite consensus disorder prediction 552 567 - -
Tsu08g02625 576 CDD BTB_POZ_NPR_plant 41 181 - -
Tsu08g02625 576 ProSiteProfiles BTB domain profile. 60 133 IPR000210 GO:0005515
Tsu08g02625 576 PANTHER REGULATORY PROTEIN NPR3 4 571 IPR044292 GO:0009862|GO:2000022|GO:2000031
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02625 Tsu-Chr8 39556804 39559590 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu08g02625 NPR1_like_C 1.5e-82 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02625 K14508 - gmx:100800032 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02625 08 39556804 39559590 Tsu08g02625 08 39556804 39559590 ECH