Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02602 ATGGATCTGCTTGGACCTAGTCTCGAAGATATGTTTAATTTCTGTAATAGAAAGCTCTCGCTAAAAACAGTTCTCATGCTTGCTGAGCAAATGATCAAACGTGTTGAGTTTGTTCATTCTAAATCGTTTCTCCATCGGGATATCAAACCAGATAATTTCCTCATGGGTGTGGGAAAACGGGAAAACCAGGTTTACTGTATTGATTTTGGTTTAGCGAAGAAATATAGAGATAGTTCAACCCATCAACACATTCCTTACAGGGAAAATAAGAATTTGACCGGAACTGCAAGATATGCTAGCATGAATACTCACCTTGGCATTGAGCAAAGCCGAAGAGATGATTTAGAGTCTGTTGGTTATGTCTTGATGTACTTCCTGAGAGGAAGTCTCCCTTGGCAAGGACTTCAAGCACGAACCAAGAGAGAAAAGTACGAGAAAATCCGTGATAAGAAGGTTTCTACCTCGATTGAGGCCTTGTGTCGAGGTTATCCAACAGAATTTGCATCATACTTCCATTATTGCCGGTCATTGAGATTTGATGATAGGCCAGATTATGCTTACCTCAAAAGAATATTTCGCGACCTGTTTATTCGTGAAGCAGGATTTCAGTCTGATTACGTCTTTGATTGGACTATCTTGAAGTATGAAGAATCACAGCGAGTCACTCCTCCGGCACGTCCTATTGCGCCTGGTGCTAGTTCTGGAATGCCTCTTGCTATGGCTAATGCTAATAGACACACAGGAAGGGAAGAAGGGCGTCTTCCTGGTATGGCTTCGGTAGACAATTCAAGGCGAAGAATGTCGGGACCCATTTTAAATTCTGTAAATAATTCAAAGCAGAAAAATCCAATCCCTATGTTATCAAGTGCCAGCAATGTCTTGGGTGAGTCAAGTGTGTCAAGGCGAGGTGCTGTTAGTAGTAGCCGCAATGCATTTGGTGGCGCTGATTCGGATCTTCGTGCTCGTGCTACTGAATCTAACCGTggaaaatcaaacataaattcAACTGGACAAAGAAGTTCACAAATTGGATCTTCGGATCCAAACAGAGTACCACCATCTTCTAAACATGGTTCTTCTCATGTCAAGAATTATGAAAATTCAGTCAAGGGCATTGAgggtttgaaattataa 1134 0.4074 MDLLGPSLEDMFNFCNRKLSLKTVLMLAEQMIKRVEFVHSKSFLHRDIKPDNFLMGVGKRENQVYCIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESVGYVLMYFLRGSLPWQGLQARTKREKYEKIRDKKVSTSIEALCRGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREAGFQSDYVFDWTILKYEESQRVTPPARPIAPGASSGMPLAMANANRHTGREEGRLPGMASVDNSRRRMSGPILNSVNNSKQKNPIPMLSSASNVLGESSVSRRGAVSSSRNAFGGADSDLRARATESNRGKSNINSTGQRSSQIGSSDPNRVPPSSKHGSSHVKNYENSVKGIEGLKL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02602 377 MobiDBLite consensus disorder prediction 244 289 - -
Tsu08g02602 377 ProSiteProfiles Protein kinase domain profile. 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02602 377 PANTHER CASEIN KINASE I-LIKE 1 358 - -
Tsu08g02602 377 SUPERFAMILY Protein kinase-like (PK-like) 1 210 IPR011009 -
Tsu08g02602 377 Pfam Protein kinase domain 10 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02602 377 MobiDBLite consensus disorder prediction 323 377 - -
Tsu08g02602 377 PANTHER CASEIN KINASE-RELATED 1 358 - -
Tsu08g02602 377 Gene3D Transferase(Phosphotransferase) domain 1 1 228 - -
Tsu08g02602 377 SMART serkin_6 1 197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02602 377 MobiDBLite consensus disorder prediction 266 289 - -
Tsu08g02602 377 MobiDBLite consensus disorder prediction 326 366 - -
Tsu08g02602 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 43 55 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02602 Tsu-Chr8 39153326 39160614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02602 16 197 MAP Kinase Kinase Kinase AT5G58950 23.913 1.05e-10 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Tsu08g02602 Pkinase 1.8e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02602 K02218 - gmx:100811567 562.377