Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02599 ATGAGTCGTAAGAGAGACAACTCCCACTTTTCCCGCCACGACTTTAAGCGCCGTCGTCCACTACCGGAGCCGGTGGAGGAAGAAAAACCCACCACAAGACCAACTCCACCGTCTGCAGTGGTCGTCATGGGTCTTCCTCTTGACTGTTCCGTCCTCGATCTCAAGTCTCGGTTCGAGATCTACGGCTCTATCTCCCGCATCCGTATCGACCGTGACGCCGTCGGATACATCACCTACCGGACCAAAGACTCCGCCGACGCTGCCATTGCTGCTGGACATGATCCTTCGTTTGGACTCACCGTCAATTCGAAAAAGGTTCAGGTATTGTGGGCAACGGATCCTCTAGCAATGTGGAGGGAAGGAGTTGGTAAGAACAAGGATAGTGTGTCTATGTCAAAGCTTGTGCGAGCCGAGGTACCTTTGAGGAGGCATGGAAGAGGTAATAAGCTTGCTTCTGCTATTGGGAAGACCAAAAGTAGCGAGGATGGTTCTGGTAGCTCTGTTATTGAAGTTCCTTTCAGGGGAAGAGAAATTGTTGCTTATGATGATATCATtgaagaagagaagaagtaCGAATCAGAAAGATTATGGAGTTGGGGTGCTGGAACAGATGGTCAATTAGGAACAGGAAGACTTCAAGATGAACAAATCCCTCAACAACTGTCTCTCTCTTCTGTCTCTTCACTTGCCTGTGGCGGCGCTCATGTCATCGCCTTAACTTCTGCTGGGAAGGTATTGTCATGGGGTAGGGGCAATTCTGGTCAACTAGGCCATGGAGAGGTTGTCAATAATGTATTGTATCCCAAAGCTGTAACATCATTGGATAATTACTTCATAACTCATGTCTCTGCTGGTTGGAGTCACTCAGGTTTTGTTTCAGATACAGGGTGCTTGTTCACCTGTGGGGATGGTTCCTTTGGTCAACTTGGACATGGTGATTATGCCTCACACAGTTCACCTGTCAAAGTGTCATACTTTGTTGATCAGCATGTTGCACAGGTTGCATGTGGAATGCGCCATTCTCTTGTCTTGTTGAAAGGTTCTCTTTCAAATCAAGTTTATGGATTTGGTTCTGGGAAGCGTGGTCAACTGGGTGTCtccaaagataaaataaaatctattaaTCTTCCTGAAGTTGTTAATGGACTTGAAGATGTGGAAATAGTTGGAGTTTCTGCAAATGGAGATCATAGTGCTGCATTATCTGTTGATGGAAATCTTTACACCTGGGGAAGAGGTTTCAAGGGCTTTGAAGATTCTCACCTTCCACAATGCTTAAACTCTACATTGAAATTTACTAAAGCTACTCTAGGGTGGAACCATGCTTTAGCTATGACTGGTGAAGGTGAGGTTTATATGCTTGGTGGCAACCACCTTGGAGTGCTTAGTGATCTTCACACTGTAAGACAGGCTAAGCAGTTAACTGATTCAAGAGAAGCCAATTTGGAGAAAGTACCTGGTCTTGATGGAACAAAGATTACTGATATTGCTACTGGAGCTGAGCATTCTGTCCTTGTCACAGagaatggAGAAATAAAGACATGGGGTTGGGGTGAACATGGTCAACTTGGCTTAGGGGATGATGGTGACCGAATCAGTCCTGTTACAGCAAGTCTTGGCTATGATCTGAACGAAGCCGCATCAACCAGAAGGGTGGTTCAGGTTGCATTGCACACTTTGAAGCCAGAGTCCTACGGCCTCTTAGAGCTGCGAACTAGGAAGCAAAAGGCTCGCGGATTTTCAGGTTTGAGCAAGAACATGGCTGAGATTCTTCTCTAG 1779 0.4531 MSRKRDNSHFSRHDFKRRRPLPEPVEEEKPTTRPTPPSAVVVMGLPLDCSVLDLKSRFEIYGSISRIRIDRDAVGYITYRTKDSADAAIAAGHDPSFGLTVNSKKVQVLWATDPLAMWREGVGKNKDSVSMSKLVRAEVPLRRHGRGNKLASAIGKTKSSEDGSGSSVIEVPFRGREIVAYDDIIEEEKKYESERLWSWGAGTDGQLGTGRLQDEQIPQQLSLSSVSSLACGGAHVIALTSAGKVLSWGRGNSGQLGHGEVVNNVLYPKAVTSLDNYFITHVSAGWSHSGFVSDTGCLFTCGDGSFGQLGHGDYASHSSPVKVSYFVDQHVAQVACGMRHSLVLLKGSLSNQVYGFGSGKRGQLGVSKDKIKSINLPEVVNGLEDVEIVGVSANGDHSAALSVDGNLYTWGRGFKGFEDSHLPQCLNSTLKFTKATLGWNHALAMTGEGEVYMLGGNHLGVLSDLHTVRQAKQLTDSREANLEKVPGLDGTKITDIATGAEHSVLVTENGEIKTWGWGEHGQLGLGDDGDRISPVTASLGYDLNEAASTRRVVQVALHTLKPESYGLLELRTRKQKARGFSGLSKNMAEILL 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02599 592 Gene3D - 417 561 IPR009091 -
Tsu08g02599 592 PRINTS Chromosome condensation regulator RCC1 signature 438 456 IPR000408 -
Tsu08g02599 592 PRINTS Chromosome condensation regulator RCC1 signature 245 261 IPR000408 -
Tsu08g02599 592 PRINTS Chromosome condensation regulator RCC1 signature 195 211 IPR000408 -
Tsu08g02599 592 PRINTS Chromosome condensation regulator RCC1 signature 505 526 IPR000408 -
Tsu08g02599 592 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 196 540 - -
Tsu08g02599 592 CDD RRM_SF 40 108 - -
Tsu08g02599 592 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 296 347 IPR000408 -
Tsu08g02599 592 MobiDBLite consensus disorder prediction 1 38 - -
Tsu08g02599 592 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 243 295 IPR000408 -
Tsu08g02599 592 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 496 506 IPR000408 -
Tsu08g02599 592 Gene3D - 1 115 IPR012677 -
Tsu08g02599 592 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 510 556 IPR000408 -
Tsu08g02599 592 MobiDBLite consensus disorder prediction 16 30 - -
Tsu08g02599 592 Pfam Regulator of chromosome condensation (RCC1) repeat 493 522 - -
Tsu08g02599 592 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 91 IPR000504 GO:0003723
Tsu08g02599 592 PANTHER OS01G0777800 PROTEIN 196 540 - -
Tsu08g02599 592 SUPERFAMILY RNA-binding domain, RBD 25 118 IPR035979 GO:0003676
Tsu08g02599 592 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 449 509 IPR000408 -
Tsu08g02599 592 SMART rrm1_1 39 109 IPR000504 GO:0003723
Tsu08g02599 592 SUPERFAMILY RCC1/BLIP-II 192 467 IPR009091 -
Tsu08g02599 592 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Tsu08g02599 592 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 404 IPR000408 -
Tsu08g02599 592 Pfam Regulator of chromosome condensation (RCC1) repeat 243 291 IPR000408 -
Tsu08g02599 592 Pfam Regulator of chromosome condensation (RCC1) repeat 352 401 IPR000408 -
Tsu08g02599 592 Pfam Regulator of chromosome condensation (RCC1) repeat 195 239 IPR000408 -
Tsu08g02599 592 Pfam Regulator of chromosome condensation (RCC1) repeat 296 344 IPR000408 -
Tsu08g02599 592 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 334 344 IPR000408 -
Tsu08g02599 592 Gene3D - 186 416 IPR009091 -
Tsu08g02599 592 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 194 242 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02599 Tsu-Chr8 39009193 39019101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02599 1 185 Homeobox Transcription Factor Family AT1G27050 51.220 8.72e-56 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02599 - - gmx:100793672 860.522