Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02596 ATGCGGTTAAAAAGACATAAAATATGTGTCGATGATTTTGACCTTCTAACCATTATTGGCAGGGGAGCCTTTGGTGAGGTAAGACTCTGTCGCGAGAAGAAATCAGGTAATATATATGCCATGAAAAAGTTGAAAAAGTCTGAAATGCTCAGTCGAGGACAGGTTGAGCATGTTAGAGCCGAAAGGAATGTACTTGCAGAAGTTGCCAATGACTGCATTGTGAAACTTTATTACTCCTTTCAAGATCCTGAATTCTTATATCTTATAATGGAATATTTACCTGGTGGCGATATAATGACTTTATTGATGAGGGAAGAAACTTTGACAGAAAGTGTGGCGAGATTTTACATCGCCCAAACCGTTTTAGCCATAGAGTCTATTCATAAACACAATTACATTCATCGGGATATAAAACCTGACAACCTTCTGTTAGACATAAATGGTCATATGAAACTGTCGGATTTCGGTCTTTGCAAACCACTTGACTGCTCAAATCTATCATctataaatgaaaatgaaatattgGATGATGACAACTTGAATGATACAATGGACGTTGATGGATCCTCAAACTCGTATAGAAAAAATGGTAGGCGTTGGAAAAGTCCGCTTGAACAACTTCAACATTGGCAAATGAATCGGAGGAAGTTGGCATTTTCAACTGTTGGAACTCCAGACTATATTGCTCCGGAAGTGTTACTTAAAAAGGGTTATGGTGTCGAGTGCGACTGGTGGTCTCTTGGCGCTATAATGTATGAGATGCTTGTCGGTTATCCTCCGTTTTACTCTGATGATCCTGTAACAACATGCAGAAagATCGTGCACTGgaaaaatcacttaaaatttCCGGACGAGGCAAGAATAACACCAGAAGCAAAAGATCTGATATGCAGGTTGCTTAGTGGTGTTCCACATCGACTTGGTACAAGAGGAGcaaatgaaattaaaGCTCATCCGTGGTTTAGAGATGTCATATGGGACAGGCTCTACGAAACCGAGGCAGCATTTAAACCACGAGTCATTGGGGAACTTGACACtcaaaattttatgaaattcgACGAGGTTGAACCACCAAAGCCATATCGAACTGGATCTGGACCGATCAGAAAGATGCTCTTAACTCCTCAAGATCTAAGTTTTGTTGGCTATACATATAAGAATTTTGCCGCTGTCAAGGGGAAACGCCACTCTGTTGAAAATAACTTTTTGCTTCCATTGCATTTGAAGTTGAGATGCAATCCTTCTCATTGTGCATGTGTGCTTACGATAACTAGAACCTGTGCAATGCGTGTAACACCTGAGGTTGACGAGGGCGCAGGGAGTGGTCGCCGGTGCACAAGGCATGACAATGTGCAGCTCCTGACAACTTCTAGGCAAAAACTAAATTCACATCGGAATGAGAGAGATCCTGAGACTTTGCAGGTTTGA 1428 0.3999 MRLKRHKICVDDFDLLTIIGRGAFGEVRLCREKKSGNIYAMKKLKKSEMLSRGQVEHVRAERNVLAEVANDCIVKLYYSFQDPEFLYLIMEYLPGGDIMTLLMREETLTESVARFYIAQTVLAIESIHKHNYIHRDIKPDNLLLDINGHMKLSDFGLCKPLDCSNLSSINENEILDDDNLNDTMDVDGSSNSYRKNGRRWKSPLEQLQHWQMNRRKLAFSTVGTPDYIAPEVLLKKGYGVECDWWSLGAIMYEMLVGYPPFYSDDPVTTCRKIVHWKNHLKFPDEARITPEAKDLICRLLSGVPHRLGTRGANEIKAHPWFRDVIWDRLYETEAAFKPRVIGELDTQNFMKFDEVEPPKPYRTGSGPIRKMLLTPQDLSFVGYTYKNFAAVKGKRHSVENNFLLPLHLKLRCNPSHCACVLTITRTCAMRVTPEVDEGAGSGRRCTRHDNVQLLTTSRQKLNSHRNERDPETLQV 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02596 475 Pfam Protein kinase domain 213 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02596 475 Pfam Protein kinase domain 15 163 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02596 475 ProSiteProfiles AGC-kinase C-terminal domain profile. 322 395 IPR000961 GO:0004674|GO:0005524|GO:0006468
Tsu08g02596 475 SMART serkin_6 13 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02596 475 ProSiteProfiles Protein kinase domain profile. 13 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02596 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Tsu08g02596 475 Gene3D Transferase(Phosphotransferase) domain 1 97 164 - -
Tsu08g02596 475 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Tsu08g02596 475 Gene3D Phosphorylase Kinase; domain 1 340 350 - -
Tsu08g02596 475 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 398 - -
Tsu08g02596 475 Gene3D Transferase(Phosphotransferase) domain 1 220 339 - -
Tsu08g02596 475 SUPERFAMILY Protein kinase-like (PK-like) 10 379 IPR011009 -
Tsu08g02596 475 SMART pkinase_C_6 322 387 IPR000961 GO:0004674|GO:0005524|GO:0006468
Tsu08g02596 475 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 1 398 - -
Tsu08g02596 475 Gene3D Phosphorylase Kinase; domain 1 2 96 - -
Tsu08g02596 475 CDD STKc_NDR_like 11 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02596 Tsu-Chr8 38957472 38961777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02596 2 399 AGC Kinase Gene Family AT2G19400 79.500 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Tsu08g02596 Pkinase 6.5e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02596 K08790 - gmx:100802177 723.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02596 08 38957472 38961777 Tsu08g02596 08 38957472 38961777 ECH