Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02563 ATGAAACAGTCTTTTGATCCTTCATTTTTTGGTCCTTCCAAGATTCCACCAATAAGTATATCTGGAACGTCAGGTCATGGTGCAGTGAAAACTTTATCTGGATCTGATTCATTTCATACTTCATTTGATGCCAGTCTCTTTTCTAGCTCATTACCTGTTCTTCCACACGAAAAATTGAACTTAAATGAAACCGAAAATGGTTTTCAATCCGTTGATGATATCTCAACTAGCTTTAAAAAGCTTCATCAAGAGGAAGAGCTCAATGATTCCCTTGAAGATAGTAATAATCATGCAATCGGAACCATGCTTCCTGATGACGACGATGAGCTTTTGGCCGGCATAATGGATGATTTTGATCTAAGCGGTTTACCTGGTTCCCTTGAGGATTTGGAAGAGTATGATATTTTTGGTAGTGGTGGTGGTTTGGAACTAGAAACTGATGCACAAGAAAATCTCAGTGTGGGAATATCTAAGTTAAGCTTCTCTGATAGCTCTGTTAGCAATGGTTTGCCCCCTTATTCTTTACCCAATGGCCTGGGAGGCGGAGCCGTTGCTGGCGAACATCCATATGGAGAGCATCCTTCTCGGACATTGTTTGTTCGAAATATAAACAGTAATGTGGAGGATACAGAGCTGCGTATTCTTTTTGAGcaATATGGTGATATTAGAACCCTATATACTGCGTGTAAACACAGGGGGTTTGTAATGATATCGTATTATGACATCCGTGCTGCTCGAACAGCCATGCGTGCATTACAAAACAAACCTTTGCGGCGAAGGAAACTTGATATTCACTTTTCAATACCAAAGGATAATCCATCAGACAAGGATATCAATCAAGGAACCTTGGTAGTTTTCAATTTGGATTCATCTGTTTCAAATGAAGACCTCCGCCAAATATTTGGGGCTTACGGAGAGGTCAAAGAGATAAGGGAAACTCCTCACAAGAGGCATCATAAGTTTATTGAATATTATGATGTCAGAGCTGCAGAAGCAGCACTTAAATCATTAAATAGGTGTGACATTGCTGGTAAACGCATAAAGCTTGAACCAAGTCGGCCTGGAGGAGCTCGTCGCAATATGATGCTCCAACTGAATCAAGAGCTTGACCAAGATGAGTCTCGAAGTTTTCGATATCAAGTGGGTTCACCTCTAGCCAACTCTCCGCCAGGTAATTGGTTACAGTTCAGCAGCCCTGTCGAGCAGAGTTCATTGTCAACTGTCAATCATTCTCCTGGTTCCAGTATCATGAGCCCAACAACCTGCTCTAATTTACCTGGATTAGCTTCAATTTTGCAACCACAGGTATCTAACACGGCAAAGGCCACAACTCTTGGCAAGGATATAGGAAGGAGTAGTCACCACATATTTTCCAGTACAAGTTCATCCTCTGGATCTACTTTCAACTCACATTCACTTCCAGAGCCAAAGTTCAGTCAATATCGTGGAACTTTGTCCTCATTTGGTGCATCAACATCAAATGGGTCTTCAGTAGAAACCTTGACCGCTCCACAGTTTCTATGGGGAAGTCCAAACTTATCCTCAGCGCAAACCAAACCTTCGGCTTGGCAAAGATCATCCGTGGGACATCAACTTAGTACATTGAATGGAACGAGTCATGCTTTCCCATACTCAAGTCAGAGCAATTCCTTTGTTAGTTCGTCCCAGcaacatcaccatcatcatgTTGGTTCTGCTCCATCAGGTTTGCCTTTTGAGAGGCACTTCGGTTTTTTCCCCAAGTCATCTGAAACTTCATTGATGAATAATGTTGGCTATAGTGGCATGGGTCTAGGGCACAATGATGGAAATTACTTGCTTAATGCTGCTATGTCTGGTAATGCCAGCAGATCTATTCCAAGAAATATGGCTGATAATGGTTCATCAAACTTCAGAATGAGATCTTCTCCGATACTTAGCCCAGTGTTTTTGGGTAATGGTCCTTATCCAGGAGTTTTACCTACTGCTATGGAGAGTTTATCTGACCGTGTTAGGAGTAGATGGATTGATAACAATGGTAGCCAAGTTGACAGCAAGAAGCTATTTCAGCTCGACTTGGATAAGATCAAAAGTGGTGAAGATACGAGGACTACATTGATGATAAAGAATATCCCAAATAAATACACCTCAAAAATGTTGTTGGCTGCCATTGATGAATATTACAAGGGCACCTATGATTTTCTCTATCTCCCAATTGACTTTAAGAATAAATGCAATGTCGGTTATGCATTTATCAACATGCTGTCACCCTCGCATATTATTCCATTCTTCGAGACATTCAATGGGAAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCTTTGGCTTATGCTCGAATCCAAGGGAAGAATGCCCTTGTGAACCATTTCCAAAATTCAAGTTTGATGAATGAAGATAAGCGCTGCCGACCTATTGTCTTCCACTCAGATGGTTCTGAAGCTGGTGATCAGGCCTTACATGAGCATATCCCCTCCAACTACAACAATATTCAGGCAGTTAAGTCAAGTGAGTTACAATTAAGTGATTCGCTCGGATTCCCTACAAAGGACGGTTTTCATGTGAATTTGGATGCAAATTAA 2583 0.4096 MKQSFDPSFFGPSKIPPISISGTSGHGAVKTLSGSDSFHTSFDASLFSSSLPVLPHEKLNLNETENGFQSVDDISTSFKKLHQEEELNDSLEDSNNHAIGTMLPDDDDELLAGIMDDFDLSGLPGSLEDLEEYDIFGSGGGLELETDAQENLSVGISKLSFSDSSVSNGLPPYSLPNGLGGGAVAGEHPYGEHPSRTLFVRNINSNVEDTELRILFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSDKDINQGTLVVFNLDSSVSNEDLRQIFGAYGEVKEIRETPHKRHHKFIEYYDVRAAEAALKSLNRCDIAGKRIKLEPSRPGGARRNMMLQLNQELDQDESRSFRYQVGSPLANSPPGNWLQFSSPVEQSSLSTVNHSPGSSIMSPTTCSNLPGLASILQPQVSNTAKATTLGKDIGRSSHHIFSSTSSSSGSTFNSHSLPEPKFSQYRGTLSSFGASTSNGSSVETLTAPQFLWGSPNLSSAQTKPSAWQRSSVGHQLSTLNGTSHAFPYSSQSNSFVSSSQQHHHHHVGSAPSGLPFERHFGFFPKSSETSLMNNVGYSGMGLGHNDGNYLLNAAMSGNASRSIPRNMADNGSSNFRMRSSPILSPVFLGNGPYPGVLPTAMESLSDRVRSRWIDNNGSQVDSKKLFQLDLDKIKSGEDTRTTLMIKNIPNKYTSKMLLAAIDEYYKGTYDFLYLPIDFKNKCNVGYAFINMLSPSHIIPFFETFNGKKWEKFNSEKVASLAYARIQGKNALVNHFQNSSLMNEDKRCRPIVFHSDGSEAGDQALHEHIPSNYNNIQAVKSSELQLSDSLGFPTKDGFHVNLDAN 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02563 860 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 354 IPR000504 GO:0003723
Tsu08g02563 860 MobiDBLite consensus disorder prediction 546 562 - -
Tsu08g02563 860 Pfam RNA recognition motif 2 696 792 IPR007201 -
Tsu08g02563 860 CDD RRM1_MEI2_like 195 271 IPR034453 -
Tsu08g02563 860 Gene3D - 280 378 IPR012677 -
Tsu08g02563 860 PANTHER RNA RECOGNITION MOTIF-CONTAINING 2 854 - -
Tsu08g02563 860 SMART rrm1_1 282 350 IPR000504 GO:0003723
Tsu08g02563 860 SMART rrm1_1 698 774 IPR000504 GO:0003723
Tsu08g02563 860 SMART rrm1_1 197 265 IPR000504 GO:0003723
Tsu08g02563 860 MobiDBLite consensus disorder prediction 546 568 - -
Tsu08g02563 860 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 269 IPR000504 GO:0003723
Tsu08g02563 860 PANTHER PROTEIN MEI2-LIKE 2 2 854 - -
Tsu08g02563 860 MobiDBLite consensus disorder prediction 1 26 - -
Tsu08g02563 860 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 348 IPR000504 GO:0003723
Tsu08g02563 860 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 262 IPR000504 GO:0003723
Tsu08g02563 860 CDD RRM3_MEI2_like 699 784 IPR034454 -
Tsu08g02563 860 SUPERFAMILY RNA-binding domain, RBD 698 783 IPR035979 GO:0003676
Tsu08g02563 860 SUPERFAMILY RNA-binding domain, RBD 193 356 IPR035979 GO:0003676
Tsu08g02563 860 Gene3D - 185 279 IPR012677 -
Tsu08g02563 860 CDD RRM2_MEI2_like 280 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02563 Tsu-Chr8 38480434 38487128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02563 191 389 Eukaryotic Initiation Factors Gene Family AT1G71770 26.009 7.17e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02563 - - gmx:100787152 1367.06