Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02556 ATGACGTCACGTTCGTCGCATGGCGGCAgaagcagcagcagcagcagcagccaCGGCGGACGTCCTAGAGCTGGAAAGTATGAGCTTGGTAGGACGCTTGGCGAAGGAAATTTTGCGAAGGTGAAGTTTGCCAGACATGTTGAAACTGGAGAACATGTAGCTATCAAAATTCTTGACAAGGAAAAAATTCTCAAGCACAAAATGATTCGTCAgATAAAGCAAGAAATATCAACAATGAAACTGATTAGACACCCAAATGTCATACGCATGCATGAGGTAATAGCGAACAGGTCAAAGATATTCATTGTAATGGAAATTGTGACTGGTGGGGAgctgtttgataaaattGCACGCAATGGGAGGTTGAAAGAAGATGAAGCAAGAAAATACTTTCAGCAGCTTATATGTGCTGTGGATTACTGTCATAGTAGAGGTGTTTGCCACAGAGACCTAAAGCCTGAGAATTTGTTGTTGGATGCTAACGGAGTGCTTAAAGTATCGGATTTTGGATTGAGTGCATTGCCTCAACAAGTTCGGGAAGATGGGCTACTTCACACAACATGTGGTACTCCAAATTATGTTGCTCCGGAGGTGATCCAAAACAAAGGGTATGATGGTGCAATTGCAGATCTCTGGTCATGTGGTGTTATTCTTTTCGTTTTAATGGCAGGCTATTTGCCCTTCGAAGAAGACAATCTTGTGGCTTTATATAAAAAGATTTTCAAGGCTGAGTTCACGTGTCCTCCCTGGTTCTCTTCAAGTGCAAAGAAACTAATCAAAAGAATCCTTGATCCCAGTCCTGTCACAAGGATTAAAATTGCCGAAGTCATTGACAATGAGTGGTTCAAGAAGGGATATACGCCTCCTGTGTTTGAACAGGCTGATGTTAGTCTTGATGATGTAAACTCAATTTTCAGCGGTTCTATGGATTCGGATAGTATTGTTTTTGAGAGACATGAAGAAGGGCCTGTTGCACCTGTGACCATGAATGCGTTTGAACTTATCTCTAAGTCACAGGGCCTCAACCTTGGTAGCCTTTTTGAGAAGCAAATGGGACTTGTTAAAAGAGAAACAAGATTCACATCCAAATGTTCAGCGAGTGAGATAATTGCAAAAATCGAGGAAACTGCTGGACCTCTGGGTTTTGATGTAAGGAAGAACAACTGCAAGTTAAGGATTCATGGGGAAAAATCTGGACGGAAAGGTCATCTATCTGTAGCCACGGAGATCTTGGAGGTGGCCCCTTCAGTTTACATGGTTGAGATGCGAAAATCTGAAGGAGATACTCTGGAATTTCACAAGTTCTACAAAAATATATCTACTGGGCTGAAAGATATTGTATGGAAAGCAGATCCTATTGCTGAAGAAAGTGATGATGGTGCCAGTACCTCCTCAAAATAA 1401 0.4061 MTSRSSHGGRSSSSSSSHGGRPRAGKYELGRTLGEGNFAKVKFARHVETGEHVAIKILDKEKILKHKMIRQIKQEISTMKLIRHPNVIRMHEVIANRSKIFIVMEIVTGGELFDKIARNGRLKEDEARKYFQQLICAVDYCHSRGVCHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVIQNKGYDGAIADLWSCGVILFVLMAGYLPFEEDNLVALYKKIFKAEFTCPPWFSSSAKKLIKRILDPSPVTRIKIAEVIDNEWFKKGYTPPVFEQADVSLDDVNSIFSGSMDSDSIVFERHEEGPVAPVTMNAFELISKSQGLNLGSLFEKQMGLVKRETRFTSKCSASEIIAKIEETAGPLGFDVRKNNCKLRIHGEKSGRKGHLSVATEILEVAPSVYMVEMRKSEGDTLEFHKFYKNISTGLKDIVWKADPIAEESDDGASTSSK 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02556 466 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 21 454 - -
Tsu08g02556 466 PANTHER SERINE/THREONINE KINASE 21 454 - -
Tsu08g02556 466 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Tsu08g02556 466 SUPERFAMILY Protein kinase-like (PK-like) 24 310 IPR011009 -
Tsu08g02556 466 MobiDBLite consensus disorder prediction 1 20 - -
Tsu08g02556 466 Gene3D Kinase associated domain 1, KA1 324 449 - -
Tsu08g02556 466 SMART serkin_6 27 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02556 466 ProSiteProfiles NAF domain profile. 324 348 IPR018451 GO:0007165
Tsu08g02556 466 ProSiteProfiles Protein kinase domain profile. 27 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02556 466 Pfam NAF domain 326 386 IPR004041 GO:0007165
Tsu08g02556 466 Pfam Protein kinase domain 27 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02556 466 Gene3D Transferase(Phosphotransferase) domain 1 107 288 - -
Tsu08g02556 466 MobiDBLite consensus disorder prediction 1 28 - -
Tsu08g02556 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Tsu08g02556 466 CDD CIPK_C 330 445 - -
Tsu08g02556 466 CDD STKc_SnRK3 26 281 - -
Tsu08g02556 466 Gene3D Phosphorylase Kinase; domain 1 16 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02556 Tsu-Chr8 38353578 38359054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02556 8 456 CBL-interacting serine-threonine protein kinases AT1G01140 67.033 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Tsu08g02556 Pkinase 5.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02556 - - gmx:100788746 774.237