Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02547 ATGAATGAGGGGTACGGCCAGCTTGGGAGAAAGGGAGGAGAAATTGTTCATTACCTTGTTCCACTTGAGCTTAGGAACCTAAGAGgaAAGCCTACGGTTCAAAACACAATTTATGCATCGAAGTTGATCTTCAATCCGATTTATACTATTGCCTTGGAGTTGAAGAAGAGgaTGATGGATAAGGGTGATTCTCCTTCACCTGCTATATGCATGTTACAAGATACGTCTAAGATTAGCATCGAAGATGATTTCTTGAACATAACTCCAATGACTACTATTGAAGCGTTAAAGGATATGAAAAtgGAGACAAGTTTGATTGTTTGTGGTGTTGTGAAAGTGATActtgatgaagatgattggtTCTACACGGCTTGCATTTGTCACAAGAAAGTATATCCGGACGAAAAAATGTACTTTTGCGAGAAATGTAATAAGCATGTTGTTACCGTGTTCCCAAGatATCGCCTGAAGTTACACGTTATTGACTCCACCGATTCTGCAACATTTGTCGTGTTTGACCGCGATGGTGCAGAACTCTTCAGGAAATCGTGTTCTGACATGATTGATTCAATGTATGTTGATGGTGGTTTGGAGGTTTCTATTGGTAATAGTGTGGAAGTTTTGAATGACAATGTAACCGCTGATAATGTTGTTCAGgATTTGCTAGAAAAATTTAGTGATGAGGCCGTCGTTCCTAAAAAGGTGACCATAGATCTCGATGAAATTGTTGATGGTGCTGATGTTTTGAAGAGGGATTTTTCTGTTGTGGAGTCAAGTGGTGGTGGTGTTACCCTCAACCTCAAGAAGGTCAAGATTGAGAAAGACTGA 828 0.3865 MNEGYGQLGRKGGEIVHYLVPLELRNLRGKPTVQNTIYASKLIFNPIYTIALELKKRMMDKGDSPSPAICMLQDTSKISIEDDFLNITPMTTIEALKDMKMETSLIVCGVVKVILDEDDWFYTACICHKKVYPDEKMYFCEKCNKHVVTVFPRYRLKLHVIDSTDSATFVVFDRDGAELFRKSCSDMIDSMYVDGGLEVSIGNSVEVLNDNVTADNVVQDLLEKFSDEAVVPKKVTIDLDEIVDGADVLKRDFSVVESSGGGVTLNLKKVKIEKD 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02547 275 Pfam Replication factor-A C terminal domain 109 187 IPR013955 -
Tsu08g02547 275 Gene3D - 81 228 IPR012340 -
Tsu08g02547 275 SUPERFAMILY Nucleic acid-binding proteins 88 191 IPR012340 -
Tsu08g02547 275 CDD RPA1_DBD_C 107 194 IPR013955 -
Tsu08g02547 275 PANTHER REPLICATION FACTOR A 1, RFA1 29 188 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu08g02547 275 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 29 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02547 Tsu-Chr8 38206928 38210465 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02547 35 187 Core DNA Replication Machinery Family AT4G19130 29.697 2.22e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02547 - - mtr:MTR_2g048560 223.016