Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02533 ATGTCTCGCCCTGAAAGGAAAACTCGCCCTTCTGGTTCTCGCCCTTATGGGAGAATTGGGCTTGATTCCCGtttatCTATGCGGAGCCACATTATGTGTAGTGGGTGTAGGAACCTCTTGCTTTACCCTAGAGGAGCGAGCAATGTTTGTTGTGCATTGTGCAACACAATTACCCCTGTTCTTCCTCCCGGTATGGAAATGTCACAACTTTATTGTGGAGGCTGTAGGACATTGCTAATGTACTCTCGTGGAGCTACTAGTGTGCGATGTTCCTGCTGTAATACTTTAAATCTTGTACCAGATTCTAATCAAATGAGCCATATCCATTGTGGGAACTGCCGGACAACACTTATGTATCCTTATGGAGCTCCCTCAGTCAAATGTGCAATTTGTCACTATATCACTAATGTCTGTagccttgGTTACGTTGTGTCTTTCTGGTATATGGTTGTTACAACAAGAAGCATGATGGAAAATCGCGTTGATTTACTGGAAAACAGAATTGGTAGTATGGAGATTTCGATGGGAAACTTGAACGGTACAATGGAGCAAGTTCGTCAGATGGTGTTTGAGCAGCAAGCACAACCTCAAATCACCATTGACCAGATTCGTCAGCTCATTGAAGATCAACAGGGTCGTCGTCACCAGCGACCAAGAAGGGACGATTATGCAGAGGACGAGAGCGAAGATAGCACGATTTCGCTACGACGTCCAGGGagaaatgaaggaagaaacCGACGCGGTTTCGCCGGAAGTAGAAGGAGGTTGGAGATTCCAATTTTCAAAGGAGAAGATGCGTATGGGTGGTTGGTCCGTGTAGAACGTTACTTTCGTTTGAACGAAGTACGTGTACAGGACAAGGTAGATGCAGTAGTGTTGGCAATGGAAGAGAAAGCCTTGAATTGGTTTCAATGGTGGGAAGAAAAAACACCATTGAGGAACTGGGAGGAATTCAAGGTGGCTGTGTTGAAGAGATTCCAACCAGGATTGCTCAATAACCCTTTGGGACCACTGTTAAGTTTGAGACAAAAGGGTTCAGTAATGGAGTATAGAGACAAATTTGAGCAGCTTGTAGCACCTTTACGTAGAGATGATAGAGTGATGCTGGACTCTATTTTCTTGAATGGATTGAAAGAAGAAATACAAGCTGAGCTGAAGCTTTATGAGAGCCATGATTTGACCGAGTTAATGGATCGTGCTTTACTCATTGAAGAAAGAAATGAGGTGATGCTGAAGAGAGGGGCTGGATGGAGGGACAGAGGAGCTAACCATAGGTTCAAAGACCCTGGTGAAGGTAGTAGAAGAGAGAATGATAAAGGTGGTGCAGGGTACAATGAGAAGTACAAAGGGAAGAGGCTGGAGCCTGCAGAGTTGGAAGAAAGAAGTAAGAAAGGGCTCTGTTTCAAGTGTGGTGACAAATGGAACAGAGAACACATTTGTAAGTTCAAACATATGAGCTTAAGATTGTGTGAGGGTAGTAGTGATGAAGAGGTGGTTTGGGTGCACATTGGTGAGAGATCTGTGCTCACATTGATTGATTCTGGAGCTACTAGTAGCTTTATAGCTTCAAAACTAGTGGAGGAATTGGGGTTGCCTTTAAGAGATACACCTACTTACGTCATTGAGGTAGGGAATGGTGAAAGGGTCAAAAATCAAGGGATTTGTGAAAGCTTACAGTTTCAAATTCAAGGAGTACCATTCAGACAACATTTTTTTCTAATGGAGTTAGGGGGGTCTGAAATGGTATTGGGCATGGACTGGTTGGAAAGCTTAGGCAATATCGAAGCAAACTTTGGGAATTTGAGCCTAAAATGGGAGGCTGAAGGCAAGAAATATAGTATACAAGGAGATCCTACTATGAGCACAAGACAATCTTCATGGAAATCACTGGTGAAGTCCTTAGCTGATGAAGGGGTGATGTTCTATATATAG 1932 0.4306 MSRPERKTRPSGSRPYGRIGLDSRLSMRSHIMCSGCRNLLLYPRGASNVCCALCNTITPVLPPGMEMSQLYCGGCRTLLMYSRGATSVRCSCCNTLNLVPDSNQMSHIHCGNCRTTLMYPYGAPSVKCAICHYITNVCSLGYVVSFWYMVVTTRSMMENRVDLLENRIGSMEISMGNLNGTMEQVRQMVFEQQAQPQITIDQIRQLIEDQQGRRHQRPRRDDYAEDESEDSTISLRRPGRNEGRNRRGFAGSRRRLEIPIFKGEDAYGWLVRVERYFRLNEVRVQDKVDAVVLAMEEKALNWFQWWEEKTPLRNWEEFKVAVLKRFQPGLLNNPLGPLLSLRQKGSVMEYRDKFEQLVAPLRRDDRVMLDSIFLNGLKEEIQAELKLYESHDLTELMDRALLIEERNEVMLKRGAGWRDRGANHRFKDPGEGSRRENDKGGAGYNEKYKGKRLEPAELEERSKKGLCFKCGDKWNREHICKFKHMSLRLCEGSSDEEVVWVHIGERSVLTLIDSGATSSFIASKLVEELGLPLRDTPTYVIEVGNGERVKNQGICESLQFQIQGVPFRQHFFLMELGGSEMVLGMDWLESLGNIEANFGNLSLKWEAEGKKYSIQGDPTMSTRQSSWKSLVKSLADEGVMFYI 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02533 643 Pfam Retroviral aspartyl protease 508 590 - -
Tsu08g02533 643 PANTHER DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE 241 483 - -
Tsu08g02533 643 SUPERFAMILY Acid proteases 497 592 IPR021109 -
Tsu08g02533 643 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 107 136 IPR005735 -
Tsu08g02533 643 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 30 59 IPR005735 -
Tsu08g02533 643 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 69 99 IPR005735 -
Tsu08g02533 643 CDD retropepsin_like 499 589 - -
Tsu08g02533 643 Pfam LSD1 zinc finger 33 57 IPR005735 -
Tsu08g02533 643 Pfam LSD1 zinc finger 72 95 IPR005735 -
Tsu08g02533 643 Pfam LSD1 zinc finger 110 134 IPR005735 -
Tsu08g02533 643 MobiDBLite consensus disorder prediction 422 446 - -
Tsu08g02533 643 MobiDBLite consensus disorder prediction 209 248 - -
Tsu08g02533 643 Gene3D Acid Proteases 493 612 IPR021109 -
Tsu08g02533 643 Pfam Retrotransposon gag protein 291 379 IPR005162 -
Tsu08g02533 643 PANTHER DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE 502 627 - -
Tsu08g02533 643 PANTHER - 241 483 - -
Tsu08g02533 643 PANTHER - 502 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02533 Tsu-Chr8 37980740 37987651 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Tsu08g02533 RVP_2 2e-11 CL0129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02533 - - lang:109327750 308.531