Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02523 atGGAACAGTTGAAATTGGATGCAAAAGAGGATAGTCCTCTTCGGCACAAGCCAAAAAATAACAATGCGGTCGAGTCTTCTGATAGTCTGAGAAGTAAAAAGGTATCAGCTCGATGGGATCCAACTGAAGCATGTCGGCCAATAATGGATGAAGCACCTGTGTTTCATCCGACTATTGAAGAGTTTGAAGATACATTGAGTTATATAGCAAAGATACGCCCGCTAGCGGAACCTTATGGCATATGTAGGATTGTCCCTCCAGCTTGTTGGGTTCCACCTTGCCTTCTTAAGGAGAAAGATATATGGGAAAATGCTGAATTTTCCACCCGTATTCAGCAAATTGATTTACTTCAAAATAGAGAACctatgaagaaaaaaagtagGGGAAGGAAACGTAAACGTAGAAGTAGAAAGAACTCGAAAACAGGAACATGTAGGAGAGTTtccaattcagcttctgaagtTAAAAATGCTTCTGAAGCCGATGAGAAATATGGATTCCAATCAGGGTCGGATTTCACGTTTAAAGACTTTCAGCAATATGCTAAATACTTTAAGGAATGCTACTTTGGGTTGAAAGATACCAACGAAGATGGAAAAGTCAGTGATAGTAACCAGGAAAAGAGACGAATGCCCTCCGAGGAGGAAATTGAAGGTGAATACTGGCGAATAGTTGAACAACCAACTGATGAAGTCGAGGTGTATTACGGAGCTGATTTAGAAACCGGAGTATTTGGAAGTGGTTTTCCTAAGGCATCATCATCCTTAACTAAGGGTTATCCGGACCAGTATGCCCTTTCTGGTTGGAATCTAAATAACTTCCCACGACTACCAGGTTCTGTACTAAGTTTTGAAGGTAGTGATATATCTGGAGTACTAGTTCCATGGCTGTATGTTGGTATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTCTATTCGCTTAATTATCTACACTTCGGTGACCCAAAGATATGGTATGGAGTACCTGGAAGCCATGCTTCTGCTTTTGAAGATGCAATGAAGAAGCACTTGCCTGATTTGTTTGAGGAAGTACCAAATCTACTCAATGATCTGGTTACTCAGTTATCTCCGTCAATTCTTAAATCTGAGGGAGTGCCCGTATATCGCACTGTTCAGCATTCTGGGGAATTTGTCATTACCTTTCCAAGGGGTTACCACTCTGGGTTCAATTGCGGGTTCAATTGTGCAGAAGCAGTAAATGTGGCTCCTGTTGATTGGTTAATGCATGGCCTGAATGCTGTTGAGCTTTACAGTTTACAACGACGTAAGACATCGTTGTCACATGACAAGCTTTTATTTGGATCATCACTGGAAGCTATACGAGCCCTTGCAGAGTTAGCTCTTCATGGAAAGGAAACTCCGAAAAATTTGAAATGGAAAAGCGTCTGTGGGAAGGATGGAGTTCTTACTAAGGCATTTAAGGCAAGGATAAAGATGGAAGAGGAGAGGCTAGACTGTCTTCCAACTCATTTTAAGTTGCTGAAGATGGGCGATGACTTTGACTTGCATACTGAAAGAGAATGCTTCTCTTGCTTCTATGACTTGTATCTATCTGCTGTGGGTTGTGAGTGCTCTCCTGATAGATATTCTTGTCTTAAGCATACTAGTCCGTTCTGCTCTTGTGAAATGGAGAAAAGATTTGTTGTTCTTCGATATAATATGAGTGAGCTAAACAAACTGCTTGAAGCACTTGAAGGAGATTCTCTTGCTCTTAAGTTATGGGAAAATAGAAACTTCGGAATGGTTTCTGCTGAGGCCAATGAGGTTTGTATAGTAGATAAACCAGAGGTGGATAGACACAAGGGTCTTGAAGAAACTGGTTGCGAAGGAACCAGTTCAAATATAAATGCACCTAGTAATGTTACTTTAGAATTAATGCAGTCTGAATCTCACCTTGTAACTCTTAGTGCACCAAATGGAAGTACAGATAGTGATAGTGACAATAAGATGGTCGTAGACAAAGATAAGGTGGATCAGGCAGGTTCTCTGGATTTGAATCTTGATGTTATATCTGCTAAAAATGAAAAGTATTTGCTGCATAATGCTGATAACCGTAACAAGGGTGATTCAGTAGAGGAAAAAGTATGTTGTTCGGAGAACAAAAAGGAACAAGACAACATGGAACTAGATGGTGTGGGTGACCTATTACATTCATCTTCTGTTGTGAAGACAGAAGTTTCATCATGCTCTATGGATGTTAACAATTCTTGTACATCTGACGGTGGAAAATATGAGGTGGATCAGCAAATGGATTCAGATTCAagaaagaaaaccaaaattGTATTTGAAAAAGAACTCATAAACACCACAAGTGCGAGTATATCTTTGACGCAGGAAAGTTTCCTAACGCAAATTTTTGGTACTTCTGTCAAGCCAATAAGCTTGGGATCTGTTGTTCATGGAAAGCTATGGTGTAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGCCGAGTTAATTTCTTTAGTATCCTCAATCCAGCAAGAATCTGTAGCTATGTTTCTGAAGTTATTGATGCTGGACTTCTTGGACCTCTTTTCAAGGTTACAATGGAAGAATGTCCAAGTGACGCATTCACTGACACCTCAGCTGACAAGTGTTGGGAATCAGTTCTAAAGAGACTACATAATGAAATCATGGAGCGAAGGAATCGAGGTGAACTTGAACTTCCATCCTTAGAGCTTCTGAAAAGCGTTAATGGATTTAGAATGTTTGGCTTCCTTTTGCCGTCCATTATTCAGGCCATCGAAGCTCAAGATCCAAGTCATCAGTGTTCAGAATATTGGAATCACAAAGCTTTTCCTACATCTCCAGGCAGTGTCATCGATAACTGCAATTGTTCAAGTAGCCCTTTAGATAATAATGTCAATACCAAAGTTTTTGGTATCCATTTGATTGATCAGGCAAAGGAAAACATAGGAGGAAGTTGTCATTCTCTTGAAGAGATGAAATCAATACTACAAAAGGCAAGTCCTGATGAGCTAAGCTCATTGCGCAAGTTACTCGGTTCTGACACACAGTGCTCCGAGTGGAGAATGGCATTGATATCACTGATGGATGAGATTCAGAAAGCTTTGTAG 3114 0.3963 MEQLKLDAKEDSPLRHKPKNNNAVESSDSLRSKKVSARWDPTEACRPIMDEAPVFHPTIEEFEDTLSYIAKIRPLAEPYGICRIVPPACWVPPCLLKEKDIWENAEFSTRIQQIDLLQNREPMKKKSRGRKRKRRSRKNSKTGTCRRVSNSASEVKNASEADEKYGFQSGSDFTFKDFQQYAKYFKECYFGLKDTNEDGKVSDSNQEKRRMPSEEEIEGEYWRIVEQPTDEVEVYYGADLETGVFGSGFPKASSSLTKGYPDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHFGDPKIWYGVPGSHASAFEDAMKKHLPDLFEEVPNLLNDLVTQLSPSILKSEGVPVYRTVQHSGEFVITFPRGYHSGFNCGFNCAEAVNVAPVDWLMHGLNAVELYSLQRRKTSLSHDKLLFGSSLEAIRALAELALHGKETPKNLKWKSVCGKDGVLTKAFKARIKMEEERLDCLPTHFKLLKMGDDFDLHTERECFSCFYDLYLSAVGCECSPDRYSCLKHTSPFCSCEMEKRFVVLRYNMSELNKLLEALEGDSLALKLWENRNFGMVSAEANEVCIVDKPEVDRHKGLEETGCEGTSSNINAPSNVTLELMQSESHLVTLSAPNGSTDSDSDNKMVVDKDKVDQAGSLDLNLDVISAKNEKYLLHNADNRNKGDSVEEKVCCSENKKEQDNMELDGVGDLLHSSSVVKTEVSSCSMDVNNSCTSDGGKYEVDQQMDSDSRKKTKIVFEKELINTTSASISLTQESFLTQIFGTSVKPISLGSVVHGKLWCSKHAIYPKGFKSRVNFFSILNPARICSYVSEVIDAGLLGPLFKVTMEECPSDAFTDTSADKCWESVLKRLHNEIMERRNRGELELPSLELLKSVNGFRMFGFLLPSIIQAIEAQDPSHQCSEYWNHKAFPTSPGSVIDNCNCSSSPLDNNVNTKVFGIHLIDQAKENIGGSCHSLEEMKSILQKASPDELSSLRKLLGSDTQCSEWRMALISLMDEIQKAL 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02523 1037 Gene3D - 798 937 - -
Tsu08g02523 1037 PANTHER LYSINE-SPECIFIC DEMETHYLASE 7 1036 - -
Tsu08g02523 1037 ProSiteProfiles FYR domain FYRC motif profile. 853 943 IPR003889 GO:0005634
Tsu08g02523 1037 Pfam F/Y rich C-terminus 855 942 IPR003889 GO:0005634
Tsu08g02523 1037 MobiDBLite consensus disorder prediction 118 160 - -
Tsu08g02523 1037 MobiDBLite consensus disorder prediction 1 38 - -
Tsu08g02523 1037 ProSiteProfiles JmjC domain profile. 263 429 IPR003347 -
Tsu08g02523 1037 SMART cupin_9 263 429 IPR003347 -
Tsu08g02523 1037 Pfam JmjC domain, hydroxylase 296 412 IPR003347 -
Tsu08g02523 1037 Pfam C5HC2 zinc finger 519 571 IPR004198 -
Tsu08g02523 1037 ProSiteProfiles FYR domain FYRN motif profile. 793 851 IPR003888 GO:0005634
Tsu08g02523 1037 SUPERFAMILY Clavaminate synthase-like 184 444 - -
Tsu08g02523 1037 Pfam jmjN domain 53 86 IPR003349 -
Tsu08g02523 1037 MobiDBLite consensus disorder prediction 1 22 - -
Tsu08g02523 1037 Pfam F/Y-rich N-terminus 804 848 IPR003888 GO:0005634
Tsu08g02523 1037 ProSiteProfiles JmjN domain profile. 52 93 IPR003349 -
Tsu08g02523 1037 MobiDBLite consensus disorder prediction 124 142 - -
Tsu08g02523 1037 SMART JmjN_1 51 92 IPR003349 -
Tsu08g02523 1037 SMART fyrn_3 807 851 IPR003888 GO:0005634
Tsu08g02523 1037 Gene3D Cupin 37 413 - -
Tsu08g02523 1037 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 7 1036 - -
Tsu08g02523 1037 SMART fyrc_3 857 951 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02523 Tsu-Chr8 37679876 37686404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02523 797 977 JUMONJI Transcription Factor Family AT1G30810 48.901 1.47e-49 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu08g02523 JmjC 4.6e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02523 - - gmx:100801775 1525.38