LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g02503	ATGGATGCTAAATTTGAGGGTAAAAATAAGCATTTGTATGGACCAGTAGTGCCTGAGATGAAGAGTGGTAGTGTTGGAATGGAGAGTTCAAAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTTACTGCTAAGCAACTGAATTCAGTGCCAACAGATTGTAGAAATAGTCAACTTTTACCGGTTGATCCGGAAGTATCTCAAAATGTTGATGCTTCTAACAATTTGGCTTCTGGTGAAAGAAGTAGGGAATTGGAGAAGAGAAGGAGGGATTTTGTTGGTGAAGGGTTGGAGATGAATGGTGATTTTGGTTCTCTTAATTTGAATCTTGGGGGTCAAGTTTACCCTATCATGGAAGGAGAGGAAAAAACTGGTAAGAAAATGAAGATTGCTGTTACTACTTCGAATCGTGCTGTTTGTCAGGTGGAGGATTGTAGGGCGGATCTTAGTAGTGCAAAGGATTACCATCGTCGTCACAAAGTTTGTGATGTACATTCTAAGGCTAGTAAAGCGTTGGTTGGAAATGTTATGCAGCGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTGATGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTTGCAGGCCATAATAAGAGGAGGAGGAAGACACATCCTGATGGTGCTGAAGTTAATGGAGGCCCTCCGAATGAAGAAAGTGGTAGTAGCTATCTGTTGATGAGTCTACTAAGGATACTGTCCAATATGCATTCAAGTGGGGAAGATCATACAAGAAACATGGATGTCATATCTCGTCTGGTTGGGAACCTGACAAGTTTAGCTGGTACGTTTAACGGAAGAAATATAACGTCCTTATTGGAGGGGCCTCAAGATTTAGTAAAAGCGGGGACATCTGGAGCTGCACAGAATGTTCCAAACTCAAATACAAATGGTGCTGAACCACCAAGACGTATTGATTCTCTTGTTGAAATGAGTAATGGTCTAATCCGCCAGGACCCTCCCGAGTCTAGGTTACAGTGTGCTACAGTTCCTGTCATTCATACGACACAAAAATGTATACCTTCAAGCAGGGTTGGAGGAGTAGGATGTTTAAAACCTCCTTTGGTACCACAGTCGTCAAATGTACTTCCTTCAAGGGGTAGCCTTCCACCTCGACCAATTGCCGCAGAGACTACAGCTGGAAGAAATGGGTTAAGTAATATTGACTTGAATAGCGTATACCATGATGTTGAGGATTATGTTGAGAACCCCACGAATTCTCGTCCGTATGTGGCTTTAGGGGTTGGGTCCCACGATCATCCTTCACCGGTGCAATGTGATTCTCTCAAGTCAAGTCCACCACAGACGAGTAGAAACTCGGATTCAACCTCTACCCAGTCACCATGTAGTTCTAGCGGAGAAGGGCAGAGTCGAACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCTAATGATTTCCCTCTTGTTCTTCGATCACAGATCCTTAGCTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGACCGGGATGTATTATTTTAACTATATGTCTCCGCCTAGAAAATTCTGCATGGAATgagCTATGCTATAATCTGGGGTCCAGCTTGAGAAAGCTTGTTGCTGCATCAAATGATTCTCTTTGGAGAACAGGATGGATATATACAAGAGTGCGGCACTCTGTAGCTATTCTGTATAATGGTCAGGTGGTCTTAGATGTGCCATTACGTCTTGGAAGCCTACAAAATTGTCAGATTTTGTGCGTTAAACCCCTTGCTGTTTCTGCAAGTGCAGACGTAAAATTTACTGTGAAAGGGTTAAACCTTTTCCTGTCTAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTAGAGGATATGTGTAATGATTTGATTGATGGTGCGGAGGCAGCCATCGGACATCATGAGCTTCAGAATCTCAGTTTTTCTTGTCATATACCAAATATGACTGGAAGAGGGTTTATTGAGGTTGAAGATAATGGTCTCAGCAGCTGTTCCTTTCCATTCATAGTTGCTGAGCCTGAAATTTGTTCTGAGATATGTAATCTGGAGACCGTCATTGAAGCAGCAGAGACTGCTGATGACATCCAGATCAAAGCCAAATTAATGGAAGAAAAGGCTCGAGCAATGAATTTCGTACAAGAAATGGGTTGGCTCCTTCATAGAATTCGTGTGAAATTTAGGCTAGGGTCAATGTCACCTGTTCTAGATCCCTTCCATTTTAATCGTTATTCATGGCTTGTCGGCTTCTCTATGGACCATGATTGGTGCGCCGTGATGAAAAAACTCTTGGACATTATCTTTGAGGGTGAAATTGATACCGGAGAACATACCTCGGCAGAGCTTGCGTTGTTAAACATGGGTCTTCTTCACAAAGCTGTAAAGAGAAATTGCAGGCCTATGGTGGAATTACTGTTAAACTTTGTGCCAGTTAAAGCGTCAGATGGTGGAGACAGTAAAGAGATGCTAGTCAACAAGTCCCCTGACAGATTCCTGTTTAGACCTGATACTGTTGGGCCTGCTGGGTTGACTCCCCTTCATGTTGCAGCTAGTATGAATGGCTATGAGAATGTATTGGATGCGTTAACTGATGATCCGGGAATGGTGGGAATTGAGGCATGGAAAAATGCTAAAGACAACACAGGTTTGACAGCCAATGACTATGCATCCCTTAAGGGCCACTACTCTTACATTCAACTTGTGCAGAGGAAGACAAGCAAGAACAACCAAACTCAACATGTCCTTGACATGCCTGGCACCCTTGTAGATGGGAACACGAAGAAACAATCAGATTTGCATAAGTCGTCAAAAGTTTTAAGTTTCCATACAGAGAAGATTGCATCAACAGCAATGCCAAATCATTGTGGGCGATGCCAACAAAAGTTGGCCTACAGCGGCAGCGGTGGCATGAGGAGGGCCCTTGTTTATAGGCCAGCGATGCTTTCAATGGTTGCAATTGCAGCTGTTTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCGCCGAGAGTTTACTATGTTTTCCAGCCTTTCAGCTGGGAATCATTGGACTATGGTTCAATATAA	3093	0.4323	MDAKFEGKNKHLYGPVVPEMKSGSVGMESSKWDLNDWRWDGDLFTAKQLNSVPTDCRNSQLLPVDPEVSQNVDASNNLASGERSRELEKRRRDFVGEGLEMNGDFGSLNLNLGGQVYPIMEGEEKTGKKMKIAVTTSNRAVCQVEDCRADLSSAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHVLDEFDEGKRSCRRRLAGHNKRRRKTHPDGAEVNGGPPNEESGSSYLLMSLLRILSNMHSSGEDHTRNMDVISRLVGNLTSLAGTFNGRNITSLLEGPQDLVKAGTSGAAQNVPNSNTNGAEPPRRIDSLVEMSNGLIRQDPPESRLQCATVPVIHTTQKCIPSSRVGGVGCLKPPLVPQSSNVLPSRGSLPPRPIAAETTAGRNGLSNIDLNSVYHDVEDYVENPTNSRPYVALGVGSHDHPSPVQCDSLKSSPPQTSRNSDSTSTQSPCSSSGEGQSRTDRIVFKLFGKDPNDFPLVLRSQILSWLSHSPTEIESYIRPGCIILTICLRLENSAWNELCYNLGSSLRKLVAASNDSLWRTGWIYTRVRHSVAILYNGQVVLDVPLRLGSLQNCQILCVKPLAVSASADVKFTVKGLNLFLSSTRLLCALEGKYLVEDMCNDLIDGAEAAIGHHELQNLSFSCHIPNMTGRGFIEVEDNGLSSCSFPFIVAEPEICSEICNLETVIEAAETADDIQIKAKLMEEKARAMNFVQEMGWLLHRIRVKFRLGSMSPVLDPFHFNRYSWLVGFSMDHDWCAVMKKLLDIIFEGEIDTGEHTSAELALLNMGLLHKAVKRNCRPMVELLLNFVPVKASDGGDSKEMLVNKSPDRFLFRPDTVGPAGLTPLHVAASMNGYENVLDALTDDPGMVGIEAWKNAKDNTGLTANDYASLKGHYSYIQLVQRKTSKNNQTQHVLDMPGTLVDGNTKKQSDLHKSSKVLSFHTEKIASTAMPNHCGRCQQKLAYSGSGGMRRALVYRPAMLSMVAIAAVCVCVALLFKSSPRVYYVFQPFSWESLDYGSI	1030

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g02503	1030	MobiDBLite	consensus disorder prediction	436	468	-	-
	Tsu08g02503	1030	MobiDBLite	consensus disorder prediction	369	392	-	-
	Tsu08g02503	1030	Gene3D	-	783	930	IPR036770	-
	Tsu08g02503	1030	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	21	1029	IPR044817	GO:0003677
	Tsu08g02503	1030	ProSiteProfiles	Zinc finger SBP-type profile.	139	216	IPR004333	GO:0003677
	Tsu08g02503	1030	MobiDBLite	consensus disorder prediction	66	81	-	-
	Tsu08g02503	1030	MobiDBLite	consensus disorder prediction	206	232	-	-
	Tsu08g02503	1030	SUPERFAMILY	Ankyrin repeat	797	911	IPR036770	-
	Tsu08g02503	1030	MobiDBLite	consensus disorder prediction	420	468	-	-
	Tsu08g02503	1030	Gene3D	-	133	203	IPR036893	GO:0003677\|GO:0005634

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g02503	Tsu-Chr8	37277542	37286348	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu08g02503	1	1029	SBP-box Gene Family	AT3G60030	44.455	0.0	755

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Tsu08g02503		SBP	5.3e-29	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g02503	-		-	gmx:100776125	1549.64

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