Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02503 ATGGATGCTAAATTTGAGGGTAAAAATAAGCATTTGTATGGACCAGTAGTGCCTGAGATGAAGAGTGGTAGTGTTGGAATGGAGAGTTCAAAGTGGGATTTGAATGATTGGAGATGGGATGGTGATCTTTTTACTGCTAAGCAACTGAATTCAGTGCCAACAGATTGTAGAAATAGTCAACTTTTACCGGTTGATCCGGAAGTATCTCAAAATGTTGATGCTTCTAACAATTTGGCTTCTGGTGAAAGAAGTAGGGAATTGGAGAAGAGAAGGAGGGATTTTGTTGGTGAAGGGTTGGAGATGAATGGTGATTTTGGTTCTCTTAATTTGAATCTTGGGGGTCAAGTTTACCCTATCATGGAAGGAGAGGAAAAAACTGGTAAGAAAATGAAGATTGCTGTTACTACTTCGAATCGTGCTGTTTGTCAGGTGGAGGATTGTAGGGCGGATCTTAGTAGTGCAAAGGATTACCATCGTCGTCACAAAGTTTGTGATGTACATTCTAAGGCTAGTAAAGCGTTGGTTGGAAATGTTATGCAGCGATTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTGATGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGTCTTGCAGGCCATAATAAGAGGAGGAGGAAGACACATCCTGATGGTGCTGAAGTTAATGGAGGCCCTCCGAATGAAGAAAGTGGTAGTAGCTATCTGTTGATGAGTCTACTAAGGATACTGTCCAATATGCATTCAAGTGGGGAAGATCATACAAGAAACATGGATGTCATATCTCGTCTGGTTGGGAACCTGACAAGTTTAGCTGGTACGTTTAACGGAAGAAATATAACGTCCTTATTGGAGGGGCCTCAAGATTTAGTAAAAGCGGGGACATCTGGAGCTGCACAGAATGTTCCAAACTCAAATACAAATGGTGCTGAACCACCAAGACGTATTGATTCTCTTGTTGAAATGAGTAATGGTCTAATCCGCCAGGACCCTCCCGAGTCTAGGTTACAGTGTGCTACAGTTCCTGTCATTCATACGACACAAAAATGTATACCTTCAAGCAGGGTTGGAGGAGTAGGATGTTTAAAACCTCCTTTGGTACCACAGTCGTCAAATGTACTTCCTTCAAGGGGTAGCCTTCCACCTCGACCAATTGCCGCAGAGACTACAGCTGGAAGAAATGGGTTAAGTAATATTGACTTGAATAGCGTATACCATGATGTTGAGGATTATGTTGAGAACCCCACGAATTCTCGTCCGTATGTGGCTTTAGGGGTTGGGTCCCACGATCATCCTTCACCGGTGCAATGTGATTCTCTCAAGTCAAGTCCACCACAGACGAGTAGAAACTCGGATTCAACCTCTACCCAGTCACCATGTAGTTCTAGCGGAGAAGGGCAGAGTCGAACAGATCGAATTGTTTTCAAACTCTTTGGCAAGGATCCTAATGATTTCCCTCTTGTTCTTCGATCACAGATCCTTAGCTGGTTATCCCACAGTCCCACCGAGATAGAGAGCTATATAAGACCGGGATGTATTATTTTAACTATATGTCTCCGCCTAGAAAATTCTGCATGGAATgagCTATGCTATAATCTGGGGTCCAGCTTGAGAAAGCTTGTTGCTGCATCAAATGATTCTCTTTGGAGAACAGGATGGATATATACAAGAGTGCGGCACTCTGTAGCTATTCTGTATAATGGTCAGGTGGTCTTAGATGTGCCATTACGTCTTGGAAGCCTACAAAATTGTCAGATTTTGTGCGTTAAACCCCTTGCTGTTTCTGCAAGTGCAGACGTAAAATTTACTGTGAAAGGGTTAAACCTTTTCCTGTCTAGTACAAGGTTGCTCTGTGCACTTGAAGGGAAGTATCTGGTAGAGGATATGTGTAATGATTTGATTGATGGTGCGGAGGCAGCCATCGGACATCATGAGCTTCAGAATCTCAGTTTTTCTTGTCATATACCAAATATGACTGGAAGAGGGTTTATTGAGGTTGAAGATAATGGTCTCAGCAGCTGTTCCTTTCCATTCATAGTTGCTGAGCCTGAAATTTGTTCTGAGATATGTAATCTGGAGACCGTCATTGAAGCAGCAGAGACTGCTGATGACATCCAGATCAAAGCCAAATTAATGGAAGAAAAGGCTCGAGCAATGAATTTCGTACAAGAAATGGGTTGGCTCCTTCATAGAATTCGTGTGAAATTTAGGCTAGGGTCAATGTCACCTGTTCTAGATCCCTTCCATTTTAATCGTTATTCATGGCTTGTCGGCTTCTCTATGGACCATGATTGGTGCGCCGTGATGAAAAAACTCTTGGACATTATCTTTGAGGGTGAAATTGATACCGGAGAACATACCTCGGCAGAGCTTGCGTTGTTAAACATGGGTCTTCTTCACAAAGCTGTAAAGAGAAATTGCAGGCCTATGGTGGAATTACTGTTAAACTTTGTGCCAGTTAAAGCGTCAGATGGTGGAGACAGTAAAGAGATGCTAGTCAACAAGTCCCCTGACAGATTCCTGTTTAGACCTGATACTGTTGGGCCTGCTGGGTTGACTCCCCTTCATGTTGCAGCTAGTATGAATGGCTATGAGAATGTATTGGATGCGTTAACTGATGATCCGGGAATGGTGGGAATTGAGGCATGGAAAAATGCTAAAGACAACACAGGTTTGACAGCCAATGACTATGCATCCCTTAAGGGCCACTACTCTTACATTCAACTTGTGCAGAGGAAGACAAGCAAGAACAACCAAACTCAACATGTCCTTGACATGCCTGGCACCCTTGTAGATGGGAACACGAAGAAACAATCAGATTTGCATAAGTCGTCAAAAGTTTTAAGTTTCCATACAGAGAAGATTGCATCAACAGCAATGCCAAATCATTGTGGGCGATGCCAACAAAAGTTGGCCTACAGCGGCAGCGGTGGCATGAGGAGGGCCCTTGTTTATAGGCCAGCGATGCTTTCAATGGTTGCAATTGCAGCTGTTTGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCGCCGAGAGTTTACTATGTTTTCCAGCCTTTCAGCTGGGAATCATTGGACTATGGTTCAATATAA 3093 0.4323 MDAKFEGKNKHLYGPVVPEMKSGSVGMESSKWDLNDWRWDGDLFTAKQLNSVPTDCRNSQLLPVDPEVSQNVDASNNLASGERSRELEKRRRDFVGEGLEMNGDFGSLNLNLGGQVYPIMEGEEKTGKKMKIAVTTSNRAVCQVEDCRADLSSAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHVLDEFDEGKRSCRRRLAGHNKRRRKTHPDGAEVNGGPPNEESGSSYLLMSLLRILSNMHSSGEDHTRNMDVISRLVGNLTSLAGTFNGRNITSLLEGPQDLVKAGTSGAAQNVPNSNTNGAEPPRRIDSLVEMSNGLIRQDPPESRLQCATVPVIHTTQKCIPSSRVGGVGCLKPPLVPQSSNVLPSRGSLPPRPIAAETTAGRNGLSNIDLNSVYHDVEDYVENPTNSRPYVALGVGSHDHPSPVQCDSLKSSPPQTSRNSDSTSTQSPCSSSGEGQSRTDRIVFKLFGKDPNDFPLVLRSQILSWLSHSPTEIESYIRPGCIILTICLRLENSAWNELCYNLGSSLRKLVAASNDSLWRTGWIYTRVRHSVAILYNGQVVLDVPLRLGSLQNCQILCVKPLAVSASADVKFTVKGLNLFLSSTRLLCALEGKYLVEDMCNDLIDGAEAAIGHHELQNLSFSCHIPNMTGRGFIEVEDNGLSSCSFPFIVAEPEICSEICNLETVIEAAETADDIQIKAKLMEEKARAMNFVQEMGWLLHRIRVKFRLGSMSPVLDPFHFNRYSWLVGFSMDHDWCAVMKKLLDIIFEGEIDTGEHTSAELALLNMGLLHKAVKRNCRPMVELLLNFVPVKASDGGDSKEMLVNKSPDRFLFRPDTVGPAGLTPLHVAASMNGYENVLDALTDDPGMVGIEAWKNAKDNTGLTANDYASLKGHYSYIQLVQRKTSKNNQTQHVLDMPGTLVDGNTKKQSDLHKSSKVLSFHTEKIASTAMPNHCGRCQQKLAYSGSGGMRRALVYRPAMLSMVAIAAVCVCVALLFKSSPRVYYVFQPFSWESLDYGSI 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02503 1030 MobiDBLite consensus disorder prediction 436 468 - -
Tsu08g02503 1030 MobiDBLite consensus disorder prediction 369 392 - -
Tsu08g02503 1030 Gene3D - 783 930 IPR036770 -
Tsu08g02503 1030 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 21 1029 IPR044817 GO:0003677
Tsu08g02503 1030 ProSiteProfiles Zinc finger SBP-type profile. 139 216 IPR004333 GO:0003677
Tsu08g02503 1030 MobiDBLite consensus disorder prediction 66 81 - -
Tsu08g02503 1030 MobiDBLite consensus disorder prediction 206 232 - -
Tsu08g02503 1030 SUPERFAMILY Ankyrin repeat 797 911 IPR036770 -
Tsu08g02503 1030 MobiDBLite consensus disorder prediction 420 468 - -
Tsu08g02503 1030 Gene3D - 133 203 IPR036893 GO:0003677|GO:0005634
Tsu08g02503 1030 SUPERFAMILY SBT domain 140 220 IPR036893 GO:0003677|GO:0005634
Tsu08g02503 1030 Pfam SBP domain 142 215 IPR004333 GO:0003677
Tsu08g02503 1030 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 21 1029 - -
Tsu08g02503 1030 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02503 Tsu-Chr8 37277542 37286348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02503 1 1029 SBP-box Gene Family AT3G60030 44.455 0.0 755
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Tsu08g02503 SBP 5.3e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02503 - - gmx:100776125 1549.64