Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02496 ATGTCTTTTGAAGTTAGGAATCGAGCCGATGATTGGTCATCGGAGCTTCTTACAAATTATGCTTCTATGCTAGAAGATGATGACCTTATTAATTCTTTGACTTTCCAAGAGGAACAACATGATCCTTTGCCTCAAGCCATTAACATTGATGGTTGGGTTCCTTCTCAAGGACAAATATTCAATAGTGATGATGATGCTTATGAATTTTACTGCTCGTTTGCACAGAGAAGTGGTTTCTCAATTAGACGTCATCACGTTTATAGATCAAAGAATCAGGATGAGGGAAATCCATCAGGAGTTTATAAAAGAGAGTTTGTTTGCCATCGATTTGGTGTACCTAAACCAACCAAAGTTAATGAAGTGGAAAGTCAAAGGAATCGAAAAACTTCAAGATGTAATTGTAGTGCAAAATTGTTGGTTGCTAAAGAGACAACTGgatttgaagaaaaatgggTGGTTAAATATTTCAACAATGTTCACAACCATGATTTGCTAGATGATAAAGAGGTTCACTTTCTCCCTGCTTATCGTAACATCCCTATTGTTGACCAAAATCGAATACTGATGATGTCTAAAGCTGGTTGCTCCGTTAGTATCACAATGAGATTGCTTGAACTAGAGAAAGGAATAGATGCAGGTAGTCTACCATTTATGGAGAAAGATATTAGGAATTTCCTTCAAAACCAAAGTGGTATTAACAAAGAAAACGATGCTTTAGATGTCCTCAAATTATGTAAACATTTGAAAGAGTTAGATGATGCCTTCCAATATGATTACACAATAGATGAGAATAAGAAATTGGAAAACATTATTTGGGCATTTGGTGATTCAATCCGTGCATATGAAGCTTTTGGGGATGTGGTTGTCTTTGATACTACTTATCGAATAAACTGTTATGATATGCCACTTGGAATATGGGTTGGGGTTGACAATCATggaaattcaatttttttttgttgtgttctATTACGAAATGAGAAGATTTCTTCCTTCACATGGGCTTTAAAGAATTTTCTATCTTTTGTCAAAGGAAAGCATCCACAAACAATTCTTACAGATCAAGATCTCGCACTTAAAGAAGCCATTGCAATGGAATTACCGAACACAAAACATGCCTTTTGCATATGGCACATTGTGGCAAAGTTGTCAAGTTGGTTTTCTTTTCTATTAGGTGCAAGATATAATGACTTTAAAGGTGAGTTTTACAAGGTCTACCATTTAGATTGTGAAGATGATTTTGAACAAGATTGGGAATCAATGGTTGCACAATTTGGTCTAAGTAATGATACACATATTCATTTGTTGTATTCTCTTTGCCAATGTTGGGCTCTAGCTTATTTGAAGGACTTCTTTTTTGCTAGGATGACAACAACTAGACGTTCGGAATCgataaattcatatataaaacACTTCTTGGATGCCAAAACAAGTTTGACAGATTTTATTAGTAAAGTTGGTGTTGCTGTCCAAATAAGAAATCAAGCTGGAGAGGAGGCAAGAATGCGTCAAAAGTATCATAATCCTCTACTTAAAACAAGTTTACCGATGGAGGAAAACGTTGCATCTATACTCACACCTTATGCTTTTGGGTTGATTCAACTTGAGATTGAGTTATCTGCAAAATACGCAGCAACTGAAACAAACAATGGCTCTTTTATCGTGAAGCATCACACCAAAGTTGATGGAGGTCGTCTTGTAACTTGGATAGAAGGACAAGAATCAATTCTTTGCTCTTGTAACCAACAATTTTGCACTACAATTACATCTTGA 1770 0.3469 MSFEVRNRADDWSSELLTNYASMLEDDDLINSLTFQEEQHDPLPQAINIDGWVPSQGQIFNSDDDAYEFYCSFAQRSGFSIRRHHVYRSKNQDEGNPSGVYKREFVCHRFGVPKPTKVNEVESQRNRKTSRCNCSAKLLVAKETTGFEEKWVVKYFNNVHNHDLLDDKEVHFLPAYRNIPIVDQNRILMMSKAGCSVSITMRLLELEKGIDAGSLPFMEKDIRNFLQNQSGINKENDALDVLKLCKHLKELDDAFQYDYTIDENKKLENIIWAFGDSIRAYEAFGDVVVFDTTYRINCYDMPLGIWVGVDNHGNSIFFCCVLLRNEKISSFTWALKNFLSFVKGKHPQTILTDQDLALKEAIAMELPNTKHAFCIWHIVAKLSSWFSFLLGARYNDFKGEFYKVYHLDCEDDFEQDWESMVAQFGLSNDTHIHLLYSLCQCWALAYLKDFFFARMTTTRRSESINSYIKHFLDAKTSLTDFISKVGVAVQIRNQAGEEARMRQKYHNPLLKTSLPMEENVASILTPYAFGLIQLEIELSAKYAATETNNGSFIVKHHTKVDGGRLVTWIEGQESILCSCNQQFCTTITS 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02496 589 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 52 587 IPR031052 GO:0006355
Tsu08g02496 589 PANTHER FAR1 DNA BINDING DOMAIN, ZINC FINGER, SWIM-TYPE, MULE TRANSPOSASE DOMAIN, FHY3/FAR1 FAMILY-RELATED 52 587 - -
Tsu08g02496 589 Pfam MULE transposase domain 287 380 IPR018289 -
Tsu08g02496 589 Pfam FAR1 DNA-binding domain 68 165 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02496 Tsu-Chr8 37183083 37184928 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu08g02496 FAR1 1.7e-19 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02496 - - ccaj:109802755 767.303