Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02476 atggaagaaaaaggATCAACAAAGAAATTTTTGGAAGATGATGAAAATCCATCATATGATCATAACAATATAGATTCACAAAACAAAACCGATGAACCTTCATCTCATAACAATACTCAAGGATCTACACTTTTATTAAGTTTGAGCCTTAATAACACAACACAACTTTctcatcaaattcaaacaaagcCTCAAATCCAAatTGGCAATCTCCGAGTGAAGCTTGAGGAAGAAAAGAAGGAGAATGAAAATTTGAAAGCAATGTTAAATTTGGTCAACGAACGATGCATTGTTCTTCAAAATCGTTTACTTGTGGCGATGCATATGCATCAAATATCTTCATCGCCTCAAAATGATAACAACTTGCCGAAGGGAAATGGACAAGATGCGGAGAAATCAGTGTTACCTACTCGGCAATTCTTTGACGAACCTTCATCTTCAGATTGTAGCAAAAAAGAAGGTTttgaaaacaatgaaaacaGCATGGGAAGAAATTTTGCATGTGAGAACATTAATGAAggtgaaataaataaaaaaatagaggaTGAATCTTCTGAGGTTGGAAGCAGGAGAGCTAGAGTGTCCATTAGGGCACGATCAGATTTTTCTTTGATGGTGGATGGGTGTCAATGGAGAAAGTATGGTCAAAAGACAGCGAAAGGCAACCCTTGTCCGCGGGCCTATTATCGTTGTAGTATGGGAACTTCATGTCCGGTTCGTAAGCAgGTGCAAAGGTGTTTCAAGGATGAAAGTGTTTTCATCACAACCTATGAAGGGAACCACAATCATCAACTTCCACAAGGAGCAAAACCAATTGCAAACTTAATATCATCAGCACTCAACACATTCTTTACAAACTCATCCACAAGTTTACAATATGGCAATAATCTATCAAACACATTCCTATTCTCTTCACCATTATCTCCACCAAACTCAAATGCTATAGCTACTTTTTCTCCATCTCCAACATGTCCTATAATTACACTTGATTTTACACTCCCTCCAAGTAATTACTTGCAATTTAAAAACCACAAACAATCATCATTGTTCCCTTTTCCATTGCAAGGTTATCCTCAATCATTTGAGGGTTTTCCTAATATGATAAATAATGAGAGAAAACTTGCTTTGGTTGATGTTGTGAGTGAAGCTATAGCAAAAGATCCTTCTCTTAAGGCAACATTATTTGCAGCTATGTCATCATTTACAAATGGAGATCCTTTAAATATTAATAACCTCAACCAACCTAGTAAGAGTGGTTAA 1260 0.3437 MEEKGSTKKFLEDDENPSYDHNNIDSQNKTDEPSSHNNTQGSTLLLSLSLNNTTQLSHQIQTKPQIQIGNLRVKLEEEKKENENLKAMLNLVNERCIVLQNRLLVAMHMHQISSSPQNDNNLPKGNGQDAEKSVLPTRQFFDEPSSSDCSKKEGFENNENSMGRNFACENINEGEINKKIEDESSEVGSRRARVSIRARSDFSLMVDGCQWRKYGQKTAKGNPCPRAYYRCSMGTSCPVRKQVQRCFKDESVFITTYEGNHNHQLPQGAKPIANLISSALNTFFTNSSTSLQYGNNLSNTFLFSSPLSPPNSNAIATFSPSPTCPIITLDFTLPPSNYLQFKNHKQSSLFPFPLQGYPQSFEGFPNMINNERKLALVDVVSEAIAKDPSLKATLFAAMSSFTNGDPLNINNLNQPSKSG 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02476 419 MobiDBLite consensus disorder prediction 1 41 - -
Tsu08g02476 419 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 18 416 - -
Tsu08g02476 419 MobiDBLite consensus disorder prediction 1 20 - -
Tsu08g02476 419 SMART WRKY_cls 205 265 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g02476 419 Coils Coil 417 419 - -
Tsu08g02476 419 Coils Coil 68 95 - -
Tsu08g02476 419 MobiDBLite consensus disorder prediction 21 41 - -
Tsu08g02476 419 ProSiteProfiles WRKY domain profile. 200 266 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g02476 419 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 18 416 IPR044810 GO:0003700
Tsu08g02476 419 Pfam WRKY DNA -binding domain 207 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tsu08g02476 419 Gene3D WRKY domain 189 267 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tsu08g02476 419 SUPERFAMILY WRKY DNA-binding domain 199 266 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02476 Tsu-Chr8 36794554 36800114 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02476 69 332 WRKY Transcription Factor Family AT4G04450 36.709 5.10e-52 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tsu08g02476 WRKY 9.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02476 - - cam:101498660 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02476 08 36794554 36800114 Tsu04g04402 04 51882738 51885025 PCT