Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02452 ATGAATGATCTCCCTGAGTCAATTGATCTTCTCTCTTTTTCACATGACGGCAACAATTTCCGTGTAGCGCACGAAAAAACTTTAACCTATTATGATGTTTGCACTGGGTTCTTGATGCTCCCATATGATGAATTTGGTGAATTTGCTTTTGATAAAGCTACTACTTCTATCAAGTTAGTTGATGATTGTGGAATGTATGTGAAGATGACTAAGATTTCCGAAATTACTGGCGGAAAGATTGATTTTCAATTGAGAGTTCGGGTGATCAATCTTTGGTCTACACCAGATCGTAATTATCCAGCTGAGGATGGCGCTATGCATACGATTTTCCTTGACAAGGATTGTGGAAAAATACATGCAATTGTTAAGAAAGActtgatttttcaatttaagGATGTCATTGAGGAAGGTGCTGCTTATGTTATTGAGAGGTTTATGGTTGCCAAGAATGACTCCTCTTTCAAGACTACTCCACATAAACACAAGCTCAATTTCATGCGTGGAACTTCAGTCTTCAAAGTTACTGCTACTGAAATTCCAGCAAATCATTTCCAATTCATGTCTTTCCAAGAAATTCTAGCCTCTTCCAAGGAGGATCAGTATCTTGATGTTATTGGACATGTTGTTGAAAAGAATGTTATCAAAGAGACTGAGAAAAATGGCAACATTCATAGGGTTATGGATGCCACTCTTGAAGATTTAGAGATACACTGCACTCTTTGGGGTGATTTTGCTGTTAAAATGCAACAATTTATTGACGGCCATGACTCAACTCTTCCTGTGATAATGGTGCTTCAATTTGGCAAGCTTAAGAAGTATCTTGgCTCCATGGGAGTTTCCAATGCTTTCTATGGGACAAAATTGTTCTTGAATGGTCAAATACCTGAAGTAGCTGCCTACATAGAAAAGCATGTACTAGATGTGCTTCAAGAATTACTTTCATTGGTGGCCAGCTATACTGTGACAAATGCAAAATGCCATGAACTGCAATTCCTAGGAAGGTGGTCTTCCAACAACTATCCATCTGAACTCGATGTGTTCGTGGAGAAACGACTGCTTTTTAAAGTTGAAGTTACTGATGCCAATTTGTATCGTAATTGGCGTGGTTATACAGTGAAGAAGGTTACAGATGATGCGGATACAATTGCTCGCTTTATTTCGCTCCACGGAATAACTGTCGGTGGAGACGGCGAAGATGCCAATTGTGTTGACTTGGTGTGTAGTTTAGGGGATGATACTCCATTGGTCTCTAATGAGGGTGCTGATTCAACCAACAATGAAGAAATTATTCTCTATGGTCCTCAACATACTCCCAATAGCAAGTTATCTTGCAAGAAGTCACTTGATCTTGAAGGGATTGGCGCTTCTGCTACCAAAGAACCATCTAGGCCAATTGAGGACAGTGCTCATCTTGGTTCATCTGATCACTCGCCCTTAAAAAAACCAACTGGTAAAAGAACTGCTACTGTTGATGAAGATACCAACATTCCATTTATCTGTGACAATGATCTCAATCAAATCCCATGTTCAGCTAATACTGAGGATTTGGAGGTGCCTCTTAATTCCgATTATGATGTTGCATTAGACCGTTATGTGGGAGACAATGAGTTAACTTCCGCAACAAGTCCCGTATATTTCAATGTTGGTCAGTCGACATGCATATGTCTAGATTGCGGTGCAATTATGTGGTATGAAGAGCATGTAAAAAAAAGCTCTAAGAGAAATCCTAAATTCTCACTTTGTTGCAGTCAAGGGGATATTGAAATTGTACCCTACAAGCGATTGCCCGATCTGTTGCATAATCTATACCACGGTCGGGATAAGAGAAGCAGGTTCTTTATAGACAATATTAGGTCTTTCAATAGCATGTTTGTTTTTACGTCTATGGGAGGTGACATTGACAGTTCCTTAAACGATGGTAACGCACCACCGATGTTTGTTTTAAACGGTGAAAACTATCATCAGATTGGAAGTCTGTTACCTATGCCAGGCAAGCCACCTAAATTTGCGCAATTGTATATCTACGACACCGACAACGAGATATCAAATAGGATGGCTGCTGTTAGGATGAAAGATGATGCTGCCGCATTCAAATCATCAATTGTTAGAGATATAAGGGAAGCTCTTGATGCATGTGATAATCCTTATGTTCGTGCATACAACACAGTTCGAAACACGCTTCATTTGCAAGGAACTCCAAATGTTAAGTTGCAAATTTTGGGCAAACGGGGGTGCGATGGTAGGAGATATAATCTTCCAACTGCTTCCGAAGTTGCGGCTTTAATTGTTGGTGATTTCGATGCTACTAAATTTGAGAGGGATGTAATTGTTGAAACTCAGTCTGGTCTTCTACAACGTATATCCACATTCAAACCTTCCTATTGGCCTTTGCAATATCCGCTATTGTTTCCAAGAGGAGAAGACGGATATAGCAGAGATATTGAGTTCAGAGACAACGACAGAAAGGCTACAAGGAAACGGCAATTTATCACGCAATTAGACACAATAGAGTCTGATCGTCTTAGATACATGAGAAATCACCAGAAGGATTTACGATCTGATATGTACAAGGGTTTAACTGAGGCCATTCTTAGGGGAGATAATGATGCGGCCAATGCAGGAAAACGAGTCGTCTTACCCGCGAGTTTTGTAGGTGGTGCAAGATATATGATACAAAACTATCAGGATGCAATGGCTATATTGATATACACCATTGAGTTTCAAAAGCGTGGACTCCCACATGCTCATATTTTGGTCTTCTTGCAGTCAGCCTATAAAATGTCCCATCCTGATAGTATTGACAAAATCATAAATGCTGAAATTCCAGATAAAACTCGAGATCGTGAGCTGTTTGAGATTGTATCTACACTCATGATACATGGTCCGTGCGGTGATCAAAATAATAAGTCTCCATGCATGCAGAAGGGTAGATGTGTGAAATATTTTCCAAAGAAATTCGTCAGCAATACAAATATTGATGCTGATGATTATCCCGTGTATAGAAGAAGAGACAATGGTGTGTTTATTCAAAAGGGTGAACATTTTGCTGACAATAGATTTGTTGTTCCATATAACAGACATTTATTGTTGAAATATAATGCACATATTAATGTGGAATGGTGCAATCAATCACGATctataaaatatctttttaagtATGTCAACAAAGGCCATGATCGGGTTACTGCTGGATTTTATCGCGGAGGTCATAATGGAGATggtgttgatgttgttgatgagaTAAAAACGTATTATGATTGCAGGTATCTATCAGTAGGTGAGGCTGTCTGGAGAATATTTGTCTTTGATGTAAATTATAGAGAACCATCAGTGGATAGGTTGAGTTTTCATCTTGAGAACGAGCAATCCGTCATTTTCCCAGATGATGCCTCGATTGAAGAAATTGTTGCTAAACCATATGCTAAGTACACAAAATTTCTGGCCTGGATGGATGCCAGTAAAAGATACCCTGAAGCACGAAATCTCACATACGGTGAATTCCCTACAAAATTTGTTTGGAATAAGCAGAAGCGTGCTTGGACTCCACGTAAGCAGGGTTATTCAATCGGAAGATTGCATTTTGTTCCACCAGGTTCTGGTCAGAAATTCTACCTAAGAATTCTGCTGAATTATGCCAAAGGTCCTACCTGTTTTGACGATATCAAGACAATAAATAATGTGAAATATACCAGTTTCAAGGAAGCATGTTTTGCGGCAGGACTGATGGATGTTTCAAATCAGTTGCATCGACCCAATCGTGTATGGAATAGTACATGGGAGGAGATGAGTGATGATATTCAACACAAGCAACGACAAATTCTTAGGCGACCAG 3832 0.3894 MNDLPESIDLLSFSHDGNNFRVAHEKTLTYYDVCTGFLMLPYDEFGEFAFDKATTSIKLVDDCGMYVKMTKISEITGGKIDFQLRVRVINLWSTPDRNYPAEDGAMHTIFLDKDCGKIHAIVKKDLIFQFKDVIEEGAAYVIERFMVAKNDSSFKTTPHKHKLNFMRGTSVFKVTATEIPANHFQFMSFQEILASSKEDQYLDVIGHVVEKNVIKETEKNGNIHRVMDATLEDLEIHCTLWGDFAVKMQQFIDGHDSTLPVIMVLQFGKLKKYLGSMGVSNAFYGTKLFLNGQIPEVAAYIEKHVLDVLQELLSLVASYTVTNAKCHELQFLGRWSSNNYPSELDVFVEKRLLFKVEVTDANLYRNWRGYTVKKVTDDADTIARFISLHGITVGGDGEDANCVDLVCSLGDDTPLVSNEGADSTNNEEIILYGPQHTPNSKLSCKKSLDLEGIGASATKEPSRPIEDSAHLGSSDHSPLKKPTGKRTATVDEDTNIPFICDNDLNQIPCSANTEDLEVPLNSDYDVALDRYVGDNELTSATSPVYFNVGQSTCICLDCGAIMWYEEHVKKSSKRNPKFSLCCSQGDIEIVPYKRLPDLLHNLYHGRDKRSRFFIDNIRSFNSMFVFTSMGGDIDSSLNDGNAPPMFVLNGENYHQIGSLLPMPGKPPKFAQLYIYDTDNEISNRMAAVRMKDDAAAFKSSIVRDIREALDACDNPYVRAYNTVRNTLHLQGTPNVKLQILGKRGCDGRRYNLPTASEVAALIVGDFDATKFERDVIVETQSGLLQRISTFKPSYWPLQYPLLFPRGEDGYSRDIEFRDNDRKATRKRQFITQLDTIESDRLRYMRNHQKDLRSDMYKGLTEAILRGDNDAANAGKRVVLPASFVGGARYMIQNYQDAMAILIYTIEFQKRGLPHAHILVFLQSAYKMSHPDSIDKIINAEIPDKTRDRELFEIVSTLMIHGPCGDQNNKSPCMQKGRCVKYFPKKFVSNTNIDADDYPVYRRRDNGVFIQKGEHFADNRFVVPYNRHLLLKYNAHINVEWCNQSRSIKYLFKYVNKGHDRVTAGFYRGGHNGDGVDVVDEIKTYYDCRYLSVGEAVWRIFVFDVNYREPSVDRLSFHLENEQSVIFPDDASIEEIVAKPYAKYTKFLAWMDASKRYPEARNLTYGEFPTKFVWNKQKRAWTPRKQGYSIGRLHFVPPGSGQKFYLRILLNYAKGPTCFDDIKTINNVKYTSFKEACFAAGLMDVSNQLHRPNRVWNSTWEEMSDDIQHKQRQILRRP 1277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02452 1277 MobiDBLite consensus disorder prediction 463 488 - -
Tsu08g02452 1277 PANTHER DNA BINDING PROTEIN-LIKE 537 1032 - -
Tsu08g02452 1277 SUPERFAMILY Nucleic acid-binding proteins 68 174 IPR012340 -
Tsu08g02452 1277 SUPERFAMILY Nucleic acid-binding proteins 183 301 IPR012340 -
Tsu08g02452 1277 PANTHER BNACNNG11690D PROTEIN 537 1032 - -
Tsu08g02452 1277 CDD RPA1_DBD_A_like 84 171 - -
Tsu08g02452 1277 Gene3D - 67 173 IPR012340 -
Tsu08g02452 1277 MobiDBLite consensus disorder prediction 455 488 - -
Tsu08g02452 1277 Gene3D - 177 305 IPR012340 -
Tsu08g02452 1277 CDD RPA1_DBD_B_like 203 301 - -
Tsu08g02452 1277 Pfam Helitron helicase-like domain at N-terminus 828 901 IPR025476 -
Tsu08g02452 1277 Pfam Domain of unknown function DUF223 108 198 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02452 Tsu-Chr8 36466092 36473062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02452 82 297 Core DNA Replication Machinery Family AT5G45400 22.422 1.08e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02452 - - sspl:121766878 779.63