Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02442 ATGGCTTTTTCTTCAACACAAAAGTTACAACTATCTCAAACAAAACCAATACCATTGATTCTAACATTGTTGTTATGCAGTTCAGTACTGTGTGCTAGTGTTCCCACTGGTGGATTTGAGTTTCTTAAGGTTGCTCCATCTGAATTTGTTGGGTCAGTGAAAGATGTAGTTGAAATTTTGCAAGATGTTACTTCAATTCTTAATGAATTTGGTGGTAGTGGATTTGGTGATTCACGTCTCTCAAATGCTGTTTCTGATTGCATTGAAATGCTTGACCTTTCCTCTGATGCACTTACTTGGTCAGTTGATGCTACTCAGTCACCCAAAgGTAAGCATAATGGTACTGGAAATGTGAGCTCTGATGTGAGAACATGGCTAAGTGCTGCACTTGCAAATCCGGAGACATGCATGGATGGATTTGAAGGTACCAATGGCATTGAGAGTCAATTAGTGGCCACTGGCCTAAGCCAAATGATGTCATTGCTAAAAGATCTTCTCACACAAGTTGACCCTAAATTCGATACCTTTGCGCAAAAAGGTCAATTTCCTTCGTGGGTTAAACGAGAGGATAGGAAACTCTTGCAGGTAAATGGAGTGGGTGCGGATGTCGTCGTTGCTCTCGATGGGAGCGGTAATTTTACAAAGGTGATGGATGCGGTACATGCGGCTCCTGATTATAGCATGAAACGTTAtgttatacatataaaaaaaggtatttatattgaaaatgttgaaatcaagaagaagaaatggaATCTCATGATGGTTGGAGATGGTATGGATGCTACGATTATCTCGGGTAATCGGAGCTTCATCGACGGATGGACAACATTCAGATCGGCTACCTTTGCGGTTAGTGGTAGAGGATTCATAGCACGAGACATCACTTTTAAGAACACTGCAGGTCCTGCGAAGCACCAAGCCGTGGCACTAAGATCCGATTCTGACCTTTCTGTATTCTATCGATGTGGAATTTTCGGTTACCAAGACAGTCTCTATACTCACACCATGCGCCAATTTTATAGAGAATGTAAAATAAGTGGCACCGTGGATTTTATCTTTGGAGATGCCACAACTCTTTTCCAAAATTGTCAAATTCTAGTAAAAAAAGGGTTACCAAATCAAAAGAACACCATCACAGCTCAAGGAAGAAAAGACCCGAATGAACCAACAGGTTTCTCAATCCAATTCTGCAACATTACAGCAGATTCTGACCTTCTACCTTCTATTAATTCAACCTGGACATATCTTGGAAGACCATGGAAGGAATATTCGAGAACAATTTTCATGCAATCTTACATAAGCAATGTGTTGAGGCCGGAAGGGTGGCTAGAATGGAACGGAGATTTTGCATTGGATACATTGTACTATGCAGAGTACCTGAATTATGGGCCAGGAGCCGGAGTAAATAAACGAGTTAAATGGCCAGGGTATCACATTATGAATAATTCTAGTCAAGCTAGTAACTTCACGGTGACCCAATTTATTGAGGGAAATCTATGGTTGCCCACAACAGGTGTTGCATTCACAGCTGGACTAGGAGTTTAA 1548 0.3999 MAFSSTQKLQLSQTKPIPLILTLLLCSSVLCASVPTGGFEFLKVAPSEFVGSVKDVVEILQDVTSILNEFGGSGFGDSRLSNAVSDCIEMLDLSSDALTWSVDATQSPKGKHNGTGNVSSDVRTWLSAALANPETCMDGFEGTNGIESQLVATGLSQMMSLLKDLLTQVDPKFDTFAQKGQFPSWVKREDRKLLQVNGVGADVVVALDGSGNFTKVMDAVHAAPDYSMKRYVIHIKKGIYIENVEIKKKKWNLMMVGDGMDATIISGNRSFIDGWTTFRSATFAVSGRGFIARDITFKNTAGPAKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKISGTVDFIFGDATTLFQNCQILVKKGLPNQKNTITAQGRKDPNEPTGFSIQFCNITADSDLLPSINSTWTYLGRPWKEYSRTIFMQSYISNVLRPEGWLEWNGDFALDTLYYAEYLNYGPGAGVNKRVKWPGYHIMNNSSQASNFTVTQFIEGNLWLPTTGVAFTAGLGV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02442 515 Gene3D - 199 515 IPR012334 -
Tsu08g02442 515 Pfam Pectinesterase 202 499 IPR000070 GO:0030599|GO:0042545
Tsu08g02442 515 Pfam Plant invertase/pectin methylesterase inhibitor 78 157 IPR006501 GO:0004857
Tsu08g02442 515 ProSitePatterns Pectinesterase signature 2. 346 355 IPR033131 -
Tsu08g02442 515 TIGRFAM PME_inhib: pectinesterase inhibitor domain 75 153 IPR006501 GO:0004857
Tsu08g02442 515 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 152 IPR035513 -
Tsu08g02442 515 PANTHER PECTINESTERASE 43 171 - -
Tsu08g02442 515 PANTHER PECTINESTERASE 178 513 - -
Tsu08g02442 515 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 43 171 - -
Tsu08g02442 515 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 44-RELATED 178 513 - -
Tsu08g02442 515 SMART PMEI_2 15 168 IPR006501 GO:0004857
Tsu08g02442 515 CDD PMEI-like_4 26 169 - -
Tsu08g02442 515 SUPERFAMILY Pectin lyase-like 199 512 IPR011050 -
Tsu08g02442 515 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 170 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02442 Tsu-Chr8 36288629 36295687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02442 19 513 Carbohydrate Esterase AT3G43270 62.500 0.0 681
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02442 K01051 - gmx:100777500 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04433 04 52111183 52113347 Tsu08g02442 08 36288629 36295687 PCT