Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02437 ATGGCGTTCCAAGACTTTGATCTTGTACAAGAAAGGCGAAAAACTAATGCTGCAAAACATCTTAGGAAAAAGATTTTGTTCGGTGTAACTTCCGTCCTTCTAGTAGCATGTGTTATAGCAGCTGCAGCATTTGTTATTGTCAAACATACCGGAGGAGACCAAGGGAAGCGGGTTCCACAAGCAAAGCCAGAAGGCGCACGGGTAGATCAAACATCGAGGCTTGTGAAAGTGTTGTGCAGTAATTCGAATTACAAGGCAAAATGTGAAACCACACTTACCGAGGCATTGAAAAAAGATCCTAAATTGTCAGAACCAAAGGATCTTCTAATGGTTTCCATGGTAATCGCCGAGAACGAAATTAACAAGGCGTTCAACGAAACTGAGAAAATGAAATTCGCTTCCGAGGAAGAAAAGGGAGCTTACGAAGATTGTAAACAGTTGTTTGGGGATGCTAAAGAAGAAATGGGATTGTCAATCAATGAAGTTGGTCAAGTTGATGTTGCCAAACTATCTTCAAAAACAGCTGATTTGAACAACTGGCTTAGTGCTGTTATGTCTTACCAACAAACTTGCATTGATGGTTTCCCCGAAGGCgaatttaagaaaaaattgcagAGGATGTTCACCGAATCAAGGGAACTTGTTAGCAATTCAATGGCAGTTGTTTCACAAGTTTCTCAAATTGTTAATGCATTCAATGGTGGATTTTCTGGATTCAAATTACCTTGGGGTAAAACTGATGCATCAGCTCCCGCTCCCGTTGCTGGTGCTAATGTCAATGTTGCCGGTGCTCCTGCTGGTTCTCCTGGTGCTGCACCTATTGGTGCTCCCGGTTCTGCACCTATTGGTGCTCCCGGTTCTGATCCAATTTTCCTCGTTCCATCTGGTTCTCCTGGCGCTGCACCTGTTGGTGCGCCAGGTGCTGCTCCAGTTGCTGCCGATGCTCCTGCTTGGGCTTCACCTGTTCTTGAGTTGCCTGGATCAACTGAGAAACCTAAACCTAATGTCACCGTCGCTAAAGATGGTAGTGGAGACTTCAAAACCATCTCCGACGCTTTGGCTGCTATTCCAGCCAAATACGAAGGAAGGTATGTTGTATATGTTAAGGAAGGAGTGTACGATGAGTTGGTTACAGTAGAAAAGAAAATGGTGAACCTTACCATGTATGGTGATGGTGGTTTAAAGAGTATCATTACCGGCAACAAGAATTACGTCGATGGAGTCAGAACCTTCCAGACTGCGTCATTCGTGGTACTTGGAGAAGGATTCTTGTGCAGAGACATGGGATTCAGAAACACAGCCGGAGCCATCAAGCATCAAGCCGTGGCAGCCAGAGTCCAAGCAGATCGTGCCATATTTGTCAACTGCAACTTTGAAGGTTACCAAGACACATTGTACGCACAAACCCACAGACAATTCTACCGTGACTGTATCATTTCCGGTACAATCGATTTCATCTTTGGTGACGCATCCGCAGTCTTCCAAAACTGCCAAATGATTATTAGAAAGCCATTAGACAACCAACAAAACATTGTCACCGCACAAGGAAGAATTGACAAACAAGAAACCACCGCATTCGTCCTACAAAAATGCGTGTTCAAGGGCGAAGATGGCCTTCCCCCAACAACCAAGAATTACCTCGGAAGACCATGGAAGGAATATTCAAGGACAATTATCATGGAATCCGACATTGGCGGTTTGATTCATCCCGACGGTTGGTTACCTTGGGAAGGTGATTTTGCATTAAAAACATTGTACTATGGTGAGTTTAACAATGTTGGTGCTGGTGCTAACACTAATGCAAGAGTTAAATGGATTGGACGCAAAGACATCAACCGGGATGAGGCTATGACTTATACCGTTGAACCTTTCTTGCAAGGAACATGGATCAATGGTACAGGTGTCCCAGCTCAATTAGGcttatataattga 1932 0.4374 MAFQDFDLVQERRKTNAAKHLRKKILFGVTSVLLVACVIAAAAFVIVKHTGGDQGKRVPQAKPEGARVDQTSRLVKVLCSNSNYKAKCETTLTEALKKDPKLSEPKDLLMVSMVIAENEINKAFNETEKMKFASEEEKGAYEDCKQLFGDAKEEMGLSINEVGQVDVAKLSSKTADLNNWLSAVMSYQQTCIDGFPEGEFKKKLQRMFTESRELVSNSMAVVSQVSQIVNAFNGGFSGFKLPWGKTDASAPAPVAGANVNVAGAPAGSPGAAPIGAPGSAPIGAPGSDPIFLVPSGSPGAAPVGAPGAAPVAADAPAWASPVLELPGSTEKPKPNVTVAKDGSGDFKTISDALAAIPAKYEGRYVVYVKEGVYDELVTVEKKMVNLTMYGDGGLKSIITGNKNYVDGVRTFQTASFVVLGEGFLCRDMGFRNTAGAIKHQAVAARVQADRAIFVNCNFEGYQDTLYAQTHRQFYRDCIISGTIDFIFGDASAVFQNCQMIIRKPLDNQQNIVTAQGRIDKQETTAFVLQKCVFKGEDGLPPTTKNYLGRPWKEYSRTIIMESDIGGLIHPDGWLPWEGDFALKTLYYGEFNNVGAGANTNARVKWIGRKDINRDEAMTYTVEPFLQGTWINGTGVPAQLGLYN 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02437 643 Pfam Plant invertase/pectin methylesterase inhibitor 74 220 IPR006501 GO:0004857
Tsu08g02437 643 SMART PMEI_2 70 221 IPR006501 GO:0004857
Tsu08g02437 643 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 225 IPR035513 -
Tsu08g02437 643 Gene3D Invertase/pectin methylesterase inhibitor family protein 71 226 IPR035513 -
Tsu08g02437 643 Gene3D - 329 641 IPR012334 -
Tsu08g02437 643 TIGRFAM PME_inhib: pectinesterase inhibitor domain 69 225 IPR006501 GO:0004857
Tsu08g02437 643 CDD PMEI-like_3 78 226 - -
Tsu08g02437 643 PANTHER PECTINESTERASE 14 641 - -
Tsu08g02437 643 Pfam Pectinesterase 335 627 IPR000070 GO:0030599|GO:0042545
Tsu08g02437 643 ProSitePatterns Pectinesterase signature 2. 479 488 IPR033131 -
Tsu08g02437 643 SUPERFAMILY Pectin lyase-like 331 636 IPR011050 -
Tsu08g02437 643 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 45-RELATED 14 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02437 Tsu-Chr8 36069453 36072414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02437 287 643 Carbohydrate Esterase AT2G26450 57.418 2.04e-147 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02437 - - gmx:100796485 791.186