Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02434 atgcaatttacattttttgtcaAGACTGTGAATCGGACGACAGTTGTTTGTACAGTGTTAGATTTTGAGGACAATCAAGAGTGCTTGGATCTATTTGAGAAGAATCTCCTGGATGCTAATCATTGCTTCGAAGAGGAAAGAAGCGGAGCTTTCGGTGTTCGTCATTATGCATGGGAGGTTTTGTATGATACAAATGGCTTTATAGAAAAAAACAGAGATATGTTGTCTTCTAATTCCATTCAACTCATTTCATCATGTAATTGTGAACGGCTGAATTTGTTCTCCGAAGTATTTAGCCAATCTGAGGAGCATGGAAATTCCACTTTTCATTTTGATGCATTATACTCACAGAAGAGAGGTGTTGGAACAAACTTCAAGGATCAATTGTTCAAGTTGATGCATCAGTTGGAGAGCACCCGTCCTCACTTTATTCGCTGTGTAAAACCAAATACTAGGACACATCAAGAGCTCAGATCTTGTGGAGTTCTAGAAGCTGTTAGAATTTCAAGGGCTGGATATCCTACTCGAATGAACCATCAAGAGTTTTCCAGATGGTACGAGTTTCTGCTTTCTGGGATTGATGTACCTCGGGATCTTTGGCTACACGAAAATGTATCTCCGAGCAGGATTGGTGCCTTGGAGAATAAGAGAAAACAGTTTTTGCAGGGAACACTTCGGATTCAAAAATGCTTTCGTGGTCATCAAGCTCGTAGTTATTTCTGTGAACTTAAGAATGGAGCGACAATATTACAATCATTTATTCGTGGAGAAACTACAAGAAGGAAACATGGTCTTTTGTTGAAATCTTCCATAACCATTTATTCTAAAAAACTTGAGGAGATCCATGCAATCATATTACTTAAATCTGTGATTTGTGGGTGGATGGTTCGTAGGGATTCTAGTTACGACAATATATTGAGGATCAATCATGATAATGCAAAACCTAGACCGAGATCTCATGTTAACATGCCAGAAGTTAAGGATTTGTCCAAACTCCAAAGAGCTGGTTGA 1011 0.3818 MQFTFFVKTVNRTTVVCTVLDFEDNQECLDLFEKNLLDANHCFEEERSGAFGVRHYAWEVLYDTNGFIEKNRDMLSSNSIQLISSCNCERLNLFSEVFSQSEEHGNSTFHFDALYSQKRGVGTNFKDQLFKLMHQLESTRPHFIRCVKPNTRTHQELRSCGVLEAVRISRAGYPTRMNHQEFSRWYEFLLSGIDVPRDLWLHENVSPSRIGALENKRKQFLQGTLRIQKCFRGHQARSYFCELKNGATILQSFIRGETTRRKHGLLLKSSITIYSKKLEEIHAIILLKSVICGWMVRRDSSYDNILRINHDNAKPRPRSHVNMPEVKDLSKLQRAG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02434 336 PANTHER MYOSIN-2 ISOFORM X1 36 191 - -
Tsu08g02434 336 PANTHER MYOSIN-2 ISOFORM X1 209 315 - -
Tsu08g02434 336 ProSiteProfiles Myosin motor domain profile. 1 245 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu08g02434 336 ProSiteProfiles IQ motif profile. 222 248 IPR000048 GO:0005515
Tsu08g02434 336 Gene3D Kinesin motor domain 140 168 IPR036961 -
Tsu08g02434 336 Pfam IQ calmodulin-binding motif 225 240 IPR000048 GO:0005515
Tsu08g02434 336 Pfam IQ calmodulin-binding motif 246 263 IPR000048 GO:0005515
Tsu08g02434 336 Gene3D Myosin VI head, motor domain, U50 subdomain 74 117 - -
Tsu08g02434 336 ProSiteProfiles IQ motif profile. 243 272 IPR000048 GO:0005515
Tsu08g02434 336 Gene3D - 222 269 - -
Tsu08g02434 336 Pfam Myosin head (motor domain) 41 191 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu08g02434 336 PANTHER MYOSIN 36 191 - -
Tsu08g02434 336 PANTHER MYOSIN 209 315 - -
Tsu08g02434 336 SMART MYSc_2a 1 219 IPR001609 GO:0003774|GO:0005524|GO:0016459
Tsu08g02434 336 Gene3D - 25 139 - -
Tsu08g02434 336 MobiDBLite consensus disorder prediction 311 336 - -
Tsu08g02434 336 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 267 IPR027417 -
Tsu08g02434 336 SMART iq_5 242 264 IPR000048 GO:0005515
Tsu08g02434 336 SMART iq_5 219 241 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02434 Tsu-Chr8 36014192 36017867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02434 18 331 Myosins gene family AT5G54280 39.231 4.68e-72 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02434 K10357 - gmx:100802614 351.673