Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02420 ATGACTTCGTCTTCTGTCGTTGATTCTCTCCCGCAATTCACATTCTCTTCCATCACACGCCGTTCTTCCTCCGTCGTCTCTCGCGACTACACCGTTTGTTTGTCCAAATTCGAACAAACCGATCTCCTCCGTCTCCTTCCTCTATGCTGTCAGACCTTCCACACCGAATGCATTGACGCTTGGCTCCGTTCGAATCTCACGTGTCCACTTTGCCGATCAGCCGTCGTTTTTTCGGAGTCCGAGCTTATGAAGATTTTCCGGTCATCTTTCGCTTCCTCTGGAAACAGCTTTCGTTTAGAGATTGGAAATGTTAGTAACCGCCGTGGAACCGGAACTGCCGTATCTAACAATGTCAGTGGAGAAACTGATCGGAGATCGTACTCCGTTGGTGCGTTCGAGTATTTCATTGACGAGGAAGCTGAGATTCCGTTTGGTCACACTAATCGGAGAATTGTTTATGGTGAGAAAGATGATTTTCTGGCAATGGAGATTCCGgtgtgttga 504 0.4702 MTSSSVVDSLPQFTFSSITRRSSSVVSRDYTVCLSKFEQTDLLRLLPLCCQTFHTECIDAWLRSNLTCPLCRSAVVFSESELMKIFRSSFASSGNSFRLEIGNVSNRRGTGTAVSNNVSGETDRRSYSVGAFEYFIDEEAEIPFGHTNRRIVYGEKDDFLAMEIPVC 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02420 167 Pfam Ring finger domain 32 72 IPR001841 -
Tsu08g02420 167 ProSiteProfiles Zinc finger RING-type profile. 32 72 IPR001841 -
Tsu08g02420 167 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 161 - -
Tsu08g02420 167 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 161 - -
Tsu08g02420 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 80 IPR013083 -
Tsu08g02420 167 SUPERFAMILY RING/U-box 32 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02420 Tsu-Chr8 35743661 35744164 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02420 5 99 C3H Transcription Factor Family AT4G28890 45.263 2.96e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02420 K10663 - gmx:100804962 177.563