Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02417 ATGATGTTGCAATTTCAGGGTGTGTCAAGACATTGCAGTCTCCTTGCTGTTCTTAGTGGTAAATCACATGACAGTAAGCAAAAGCAGAAGCAAGATGATGCTTCTGAGGGTCAATTTTCATCATACCCTTTTCCCGAGCTTTCTTCGTCCGGGCGTCTTGAGGTTAAAGTATTGATTAAACCTACTTACGATGAACTTTGTCGAGTTCTCGAACAACTGCAGCCGGATTTTGTTTACCTGCAAGGTCAGCAGCTAGATGATAGGGGAGAAATTGGGTCTTTTGTATGGGAAGATTTTGACTTGTCTACCCCAGAAGCCTTGTGTGGattattttcttccaaattaCCTAATACTGTTTATTTGGAAACTCCCAAGGGCGAAAAATTGGCAGAGGCACTCCATTCTGAGggAGTACCTTACACTATATACTggaaaaatgatttttcaaaGTATGCAGCTTCACATTTTCATCAAGCTTTTTTCTCAGTGGCACAAAGTACATCCAGCCATACGTGGGATGCTTTCCAACTTGCTCAAGCATCTTTTAGACTATACTGTGCGCAAAACAATGTTGTACCACACAACAGTCGGATGGGAAGCAGTAAGCTTGGGCCACAAATTCTCGGGGAACCTCCTAACATAGAAGTTGGTCCATGTGAAGCAAATacgaaggaagaagaagaagaagattcaCCTGAGACTAGTTCTTCTATAAAgatatatgatgatgatgtgaatACGAGATTTCTTATTTGTGGATTTCCCTGCACATTGGATGCATGCTTATTGGGTTCGTTAGAGGATGGACTAAATGCTCTTCTATGTACAGAAATACGTGGATGTAAACTTCACAATCGGACAAGTGCTCCACCGCCACCTCTCCAGGCAGGAACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCTACAAGTAGTTCTGCTCATATATCACTTTTAGTGTCCGGTAGTGCGGACGCTTGTTTTAATGATCAGCTTTTGGAGaatcatattaaaaaagaaCTCACCGAGAATAGTCAGCTTGTTCAGGCAATTCCTAGTCACGAACAAAACAAATTACCTTCATACGAGCCTCGAAGATCAGCCTCAGTAGCCTGTGGATCTAGTGTGTTTGAAGTTTGTATGCGAGTTCCTACATGGGCTTCacagGTTTTGAGACAACTTGCACCGAATGTGTCATACCGCTGCCTAGTTATGTTGGGAGTTGCTAGTATTCAAGGATTGGCCGTTGCATCTTTTACTAAAGATGATGCAGGAcgtcttcttttcttttgttctgGGAAGGAGAAAGATAACTTATCCAAAGATATCGTTTTCTCTGGTAATCCTAGTTGGTTGATGCCTCCAGCACCTAGTCGAAAAAGATCCGAACCATGCACTAGAATTAAATCTGTTAATGCTAGTGGCGTTGAAGCTGAAGATATTGGCAGTGATAGAAAGAAATTATGTTTTGGTGCCATGAGGCCAATCCCTCAGTCTCATCGTCAAAAGCTTCTCCCTTTTTCTGGATTTTCCGAGGTAGAAAGATATGACAGAGACCATGGAAAGTCAAATCAGCTACTTGCTCCAATTAAGCACAATGGTTTAGGTCCCCATTCTGTTACAAACAGGAAATCTGTGTCAAACGCGTTTCAAGCTCACCAAATAATTTCTTTGAACCCACTACCTATGAAAAAGCATGGTTGTGATAGACCTCCGATACGAGCTTGCTCAGAGGAGGAATTCCTGAAGGATGTAATGCAATTTCTGGTTCTTCGAGGCCATACTCGCCTCATTCCACAAGGCGGATTTGCTGAGTTCCCTGATGCTGTTCTGAATGCTAAACGTCTCGACCTTTTCAACTTGTATAGAGAGGTGGTTTCAAGAGGAGGCTTTCACGTTGGGAATGGTATCAATTGGAAAGGACAAGTTTTCTCAAAGATGAGCAATCACACTCTGACACATAGAATGACAGGTGTTGGCAATACACTCAAAAGGCATTACGAAACTTATCTTTTAGAATATGAATTAGCTCATGATGATGTAGATGGAGAATGCTGCTTATTGTGTCACAGTAGTGCTGCTGGTGACTGGGTGAACTGCGGTTTATGTGGTGAGTGGGCTCATTTTGGCTGTGATAGGCGGCAGGGACTCGGAGCATTTAAGGATTATGCAAAAACTGATGGACTCGAATACGTTTGTCCACACTGCAGTGTATCAAATTTCAGCAAAAAATCGCAGAAAACTACAAATGGCTACTAA 2265 0.4049 MMLQFQGVSRHCSLLAVLSGKSHDSKQKQKQDDASEGQFSSYPFPELSSSGRLEVKVLIKPTYDELCRVLEQLQPDFVYLQGQQLDDRGEIGSFVWEDFDLSTPEALCGLFSSKLPNTVYLETPKGEKLAEALHSEGVPYTIYWKNDFSKYAASHFHQAFFSVAQSTSSHTWDAFQLAQASFRLYCAQNNVVPHNSRMGSSKLGPQILGEPPNIEVGPCEANTKEEEEEDSPETSSSIKIYDDDVNTRFLICGFPCTLDACLLGSLEDGLNALLCTEIRGCKLHNRTSAPPPPLQAGTFSRGVVTMRCDISTSSSAHISLLVSGSADACFNDQLLENHIKKELTENSQLVQAIPSHEQNKLPSYEPRRSASVACGSSVFEVCMRVPTWASQVLRQLAPNVSYRCLVMLGVASIQGLAVASFTKDDAGRLLFFCSGKEKDNLSKDIVFSGNPSWLMPPAPSRKRSEPCTRIKSVNASGVEAEDIGSDRKKLCFGAMRPIPQSHRQKLLPFSGFSEVERYDRDHGKSNQLLAPIKHNGLGPHSVTNRKSVSNAFQAHQIISLNPLPMKKHGCDRPPIRACSEEEFLKDVMQFLVLRGHTRLIPQGGFAEFPDAVLNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMSNHTLTHRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGLCGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSVSNFSKKSQKTTNGY 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02417 754 SMART ARID_2 574 677 - -
Tsu08g02417 754 MobiDBLite consensus disorder prediction 23 43 - -
Tsu08g02417 754 CDD PHD_ARID4_like 687 738 - -
Tsu08g02417 754 SMART bright_3 578 682 IPR001606 GO:0003677
Tsu08g02417 754 PANTHER ARID/BRIGHT DNA-BINDING DOMAIN PROTEIN 4 754 - -
Tsu08g02417 754 Gene3D - 575 680 IPR036431 GO:0003677
Tsu08g02417 754 Pfam ARID/BRIGHT DNA binding domain 580 677 IPR001606 GO:0003677
Tsu08g02417 754 CDD ARID 579 677 - -
Tsu08g02417 754 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 681 744 IPR013083 -
Tsu08g02417 754 SUPERFAMILY FYVE/PHD zinc finger 680 743 IPR011011 -
Tsu08g02417 754 MobiDBLite consensus disorder prediction 216 237 - -
Tsu08g02417 754 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 754 IPR042293 -
Tsu08g02417 754 SUPERFAMILY ARID-like 578 692 IPR036431 GO:0003677
Tsu08g02417 754 ProSiteProfiles ARID domain profile. 577 681 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02417 Tsu-Chr8 35673301 35681894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02417 2 753 ARID Transcription Factor Family AT3G43240 64.238 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Tsu08g02417 ARID 8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02417 - - gmx:100775894 1256.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02417 08 35673301 35681894 Tsu08g02417 08 35673301 35681894 ECH