Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02412 ATGGGTAAAGAGGAAAGAAACAGCCCAAACCTCGACTCCTTCCACTTATCTGGCAAGCCAAATATTTCCGATGTGGTTGATGTTTCCGATGAAGACGACGACATTAAGATTATCAATTTGATTCCAAATGATATTTCATGTAAAGGAGAGCATTCATATTCAAAAGGCTGGCGGTTTAAATGCAAACTCTGCCTGGATACTAAACGAACGTGGGAAGCTTTCTACATCAGCGGTTGCTCTCACATTTATTGCTCTGATTGCGTGGCGAACTACATCTGTTCCAAACTTAATGATAACATTATAAACATTAGGTGTCCATCCTTTTGGTGCGGATCAGGTACGTTAGAAGTAGGATTTTGCCATTCGATTCTTCCAAAGGAGGATTTTAAACTATGGAATAAGGCGGTGTGCGAGGTTTTGTTCAATATTACGGAGAAATTCTATTGTCCCTTTTTAGACTGTTCTGCTCTTTTGATCAAGGTCGGAAAGGAGGCGGTTAAGAATTTAGAATGTCCTAATTGTAATAGGATGCTATGTGGACTGTGTAAGGTTTCATGTCACGAAGGAATCGAATGCAGCAACTTCAATAAACTGAAGTGGGACGCTAAGGGGAAATATGTTATCGTGGCGAACCTTGCGAAAGACATGAGGTGGAGACAGTGTCCCAAGTGCAGTATTTATGTTGCCAAATCTGGGGGATGCAACATCATGAACTGCAGGTGTGGTTGTAGATTTTGTTACACATGTGGACGTGTCTTCTCTACTGGCATGTGCAACTGTTATAAAAGAAATTCCAATTTTCTGGATTTATCTGACTGTATTCGCCCGAGAGATTTTGGTGGTGGAGTTTCCACTAGTAAAATTTTTCCAAATAAGAACTTTATTCATCTGGATTAA 897 0.4025 MGKEERNSPNLDSFHLSGKPNISDVVDVSDEDDDIKIINLIPNDISCKGEHSYSKGWRFKCKLCLDTKRTWEAFYISGCSHIYCSDCVANYICSKLNDNIINIRCPSFWCGSGTLEVGFCHSILPKEDFKLWNKAVCEVLFNITEKFYCPFLDCSALLIKVGKEAVKNLECPNCNRMLCGLCKVSCHEGIECSNFNKLKWDAKGKYVIVANLAKDMRWRQCPKCSIYVAKSGGCNIMNCRCGCRFCYTCGRVFSTGMCNCYKRNSNFLDLSDCIRPRDFGGGVSTSKIFPNKNFIHLD 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02412 298 SUPERFAMILY RING/U-box 58 139 - -
Tsu08g02412 298 Pfam IBR domain, a half RING-finger domain 146 192 IPR002867 -
Tsu08g02412 298 ProSiteProfiles TRIAD supradomain profile. 57 269 IPR044066 -
Tsu08g02412 298 SUPERFAMILY RING/U-box 207 260 - -
Tsu08g02412 298 ProSitePatterns Zinc finger RING-type signature. 79 88 IPR017907 -
Tsu08g02412 298 SMART ibrneu5 130 192 IPR002867 -
Tsu08g02412 298 SMART ibrneu5 202 260 IPR002867 -
Tsu08g02412 298 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 27 259 - -
Tsu08g02412 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 140 IPR013083 -
Tsu08g02412 298 ProSiteProfiles Zinc finger RING-type profile. 61 106 IPR001841 -
Tsu08g02412 298 SUPERFAMILY RING/U-box 132 197 - -
Tsu08g02412 298 Gene3D - 190 272 - -
Tsu08g02412 298 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 27 259 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02412 Tsu-Chr8 35570648 35574471 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02412 32 250 C3H Transcription Factor Family AT2G19610 25.214 1.45e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02412 K11975 - gmx:100803898 230.335