Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02411 ATGGGTCAAGAAAAAAGAACAAGAACGAGAAGAAGGAACAGAGTTCCAGGACTTGACGGCTTTTTTCACAAGCGAAAAATCgccaatgaatttgatttttccgATGAAGAAAACAACTACATGAAGATCCTCAAACCTCAAAGAAACAACTTTGAAAAAATAGAGTCTTCAAATGCAAAAGACGGGCCGTTTTATTGCAAAATCTGCATGGAATATAAAACGATGAGGGACGCTTTCTTCCTCAGCGATTGCTATCATGCTTGTTGCTCCGATTGTGTTGCGATATACATCCGTTACAAACTTGAccataaaattattaacatcaGGTGTCTTTTTCCCGAGTGCCGTGGTTCATTAGAACCAGAGGTTTGCCGTTCGATTCTTCCAACCGATGATTTTAAACGATGGAATAAGGCTGTGTGCGAGATTTTGTTCAATTATACGGAGAAATTCTATTGTCCCTTTACAGAATGTTCGACTCTTTTGATCAATGATGGAACGGAGGCAGTTAGGAATTTCGAATGCCCTAATTGTAATAGGATGCTTTGCGGACAATGTAAGGTTCGATGGCATGAAGGAATCGAATGCAGCGAGTTCAAGAAACTGAAGTGGATCGATAAGGGGGAAAATGTTATGCTGGAGAACATTGCGAAAGATACGAGGTTAGTTGGACTTATCTTCGAGTATCACCACACCAAGGGACACATTTACAGAGGAAAACAGAGTGTTGCATCCTCAACACTCAAAACCATCAGGAGTTTTCCATCAGATCTATATATGCAGCGGAATTCAAGCCAGAAAACTCCTCAACAAACTTCAGGCACAATATAA 831 0.3875 MGQEKRTRTRRRNRVPGLDGFFHKRKIANEFDFSDEENNYMKILKPQRNNFEKIESSNAKDGPFYCKICMEYKTMRDAFFLSDCYHACCSDCVAIYIRYKLDHKIINIRCLFPECRGSLEPEVCRSILPTDDFKRWNKAVCEILFNYTEKFYCPFTECSTLLINDGTEAVRNFECPNCNRMLCGQCKVRWHEGIECSEFKKLKWIDKGENVMLENIAKDTRLVGLIFEYHHTKGHIYRGKQSVASSTLKTIRSFPSDLYMQRNSSQKTPQQTSGTI 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02411 276 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 146 IPR013083 -
Tsu08g02411 276 ProSiteProfiles TRIAD supradomain profile. 62 276 IPR044066 -
Tsu08g02411 276 SUPERFAMILY RING/U-box 61 144 - -
Tsu08g02411 276 Pfam IBR domain, a half RING-finger domain 149 196 IPR002867 -
Tsu08g02411 276 SMART ibrneu5 134 196 IPR002867 -
Tsu08g02411 276 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 49 222 IPR031127 GO:0004842|GO:0016567
Tsu08g02411 276 SUPERFAMILY RING/U-box 137 203 - -
Tsu08g02411 276 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 49 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02411 Tsu-Chr8 35562488 35566525 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02411 66 218 C3H Transcription Factor Family AT2G19610 27.778 7.07e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02411 K11975 - mnt:21402499 184.882