Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02409 ATGGATTTCGAGAAATTCCACCTTCCAAGAAGAACTAATACAGTTCCACAATCCACTCCAGAGATAATCGACCTCGACACCTATCGCTTATCCGGCAAGCGAGCCATCTCCGATGTCATTAATCTTTCTGATGATGAAGACGAAGACGATGACATTAAGATTCTCAATTTCATTCCCAAAACTACCCAGTTCGGAAAACGTAAAAGAATGCAAGAAGGGGCGGCATTTGTTTGCGAAATCTGCACCGATACTAAAACGATCAAGGACGCTTTCTTCATCAGCGGATGCTCTCATGCTTATTGCTCAAATTGTGTGGCGATGTACATCGGTTCCAAACTTGATGATAACATCACAAACATTGGGTGTCCGGTTCCCGAGTGCAATGGTTTATTAGAAGTGGAGCCTTGCCGTTCCATTCTAAGTCCCGAGGTTTTCGAACGCTGGGGTAAGGCGTTGGTTGAGGCTTTGATGATGATGTTTTGCGCACGATGTAAAGTTCCATGgcataatggaatggaatgtaGCGAGTACGAGAAGCTGATTGTGGACAATAGGGGGAAAGAATATGATAAGTTGGTTAAACTTGCGAAGAGGAAGAATTGGCAGCGATGCCCCAAATGCAGAGTTTATGTTGCCAGAAATAAGGGCTGCTCACACATGACCTGCAGGTGTGGTTGTAGCTTTTGTTACAAATGTGGATCAACTTATTTACCCGGTGGGCACTGTGAGTGTCATAAGGTGACGCCAAATCATCAACCTGCTGTTGTTCAACAATATGAACAAATTCCCAACACTGTTTTCACCGGTGGAGGTGGAATTCCCATTGGTGGAACTTTCCCTTTCCCTCCTGACTACCTCACCAATACATCTCAGACACCGCGACAAATTCCCTCCCTAGTTTCCACTAATGGAGTTTTTACTAGTGGAAATTTTCCTTTTAGCAACTCTGTCAATGCATATATACATCAAGAACAACTTTTCTCTAGAATTTCCGGAGGATTTTCGACTGGTGGAACTTTCCCTTTTCGGTACCCTATGAACTCGGTACAACGCCAAGAACATATTCTCAATGGAGTTTCCTCTACTGGAACTTGGCCTTATAGGTATGATACGTACCCCATCAGAGGAGGAGTTTCCACTGCTGGAACTTTGTCTAATAGGTACCCTGTCATTCCGGCTCAAccacaagaaaatattttcaaaggAGTTGTTTTACCCAACAAGGCGACAGGAGTAGGTTCCGGCCTCCATCGTTTCCACAGTGGAGTTTTTCACTAG 1278 0.4311 MDFEKFHLPRRTNTVPQSTPEIIDLDTYRLSGKRAISDVINLSDDEDEDDDIKILNFIPKTTQFGKRKRMQEGAAFVCEICTDTKTIKDAFFISGCSHAYCSNCVAMYIGSKLDDNITNIGCPVPECNGLLEVEPCRSILSPEVFERWGKALVEALMMMFCARCKVPWHNGMECSEYEKLIVDNRGKEYDKLVKLAKRKNWQRCPKCRVYVARNKGCSHMTCRCGCSFCYKCGSTYLPGGHCECHKVTPNHQPAVVQQYEQIPNTVFTGGGGIPIGGTFPFPPDYLTNTSQTPRQIPSLVSTNGVFTSGNFPFSNSVNAYIHQEQLFSRISGGFSTGGTFPFRYPMNSVQRQEHILNGVSSTGTWPYRYDTYPIRGGVSTAGTLSNRYPVIPAQPQENIFKGVVLPNKATGVGSGLHRFHSGVFH 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02409 425 ProSitePatterns Zinc finger RING-type signature. 96 105 IPR017907 -
Tsu08g02409 425 ProSiteProfiles TRIAD supradomain profile. 74 248 IPR044066 -
Tsu08g02409 425 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 157 IPR031127 GO:0004842|GO:0016567
Tsu08g02409 425 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 159 238 IPR031127 GO:0004842|GO:0016567
Tsu08g02409 425 SUPERFAMILY RING/U-box 188 245 - -
Tsu08g02409 425 SUPERFAMILY RING/U-box 75 155 - -
Tsu08g02409 425 Pfam IBR domain, a half RING-finger domain 194 239 IPR002867 -
Tsu08g02409 425 ProSiteProfiles Zinc finger RING-type profile. 78 126 IPR001841 -
Tsu08g02409 425 Pfam Zinc finger, C3HC4 type (RING finger) 78 123 IPR018957 GO:0046872
Tsu08g02409 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 157 IPR013083 -
Tsu08g02409 425 Gene3D - 171 265 - -
Tsu08g02409 425 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 157 - -
Tsu08g02409 425 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 159 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02409 Tsu-Chr8 35540175 35542795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02409 65 236 C3H Transcription Factor Family AT2G31770 23.697 1.61e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02409 K11975 - gmx:100803898 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02409 08 35540175 35542795 Tsu08g02409 08 35540175 35542795 ECH