Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02375 atggctggtgcaaaccatgaATTCGTGGGAGAGAACAATCCCCCAAATCCTCCACACCAATCTGATGGTGTTGAAACAtctgtcacgccggaaggtagcgccGCGCATGCACAAGTGACTCCACTTGATGAACCGCCGCCGCACCACGTACCGCCACCGgaagatccactggtggtccCGCAGGTACCACAAGGAGCACTAATGGAAGTGGTTATGGCCGCACTGGTCAACACCATTAACAGGAAAGGACAACTCCTTCGCGAGCTGCCTCAAAGATCTCGCGAAGTGTTCGTCGACACAGGTCGCCAACACCTGAAAACAACCGCtcgcgatcgagCACATTTCACCACTTCTCGACGACACCCGAAGACAGTGGCCAGTCTGAAAGCAGTAATCCAGGGTCCCGAGGAGTCCCTTCGAAGCTACATCGAAAGGTTCAACAAAATCTCTGTCGAGGTCAAGGCGACCGACAAAATGAAGCTGTATCTTCTCGAGGAAGGACTGTGCGAGGGAACAAAATTCCAAGAAGCTGTTGGAATCGTCGAAGTAGAaaccctcgacgcattcttTGAATTGGCCCAACGTTTCATTAAATGGgaggaaaaacaaaaagcttCTGAAGTCAGAAGGccaagaaaagaaaagggaagGATATTGTCTGAGATATCGAGCGCTGAGTTCAAAAGCGCGGGCATCAGGTTCCCAAAACAACTTCCCGCAAAgccaaacgtggacaagaagaaattctTTCGTTTCCACAAGAGTCACGGACACGTGATTGAAGACTGCGTGCACCTAAAGGACGCCATTGAAATCCTCATCCAAaagggatatgcacgacagtatgtaGATGGCCAGAGGGCTGCCAATAATCctcctcgacaaaatcagttggcagcCGATCAAGCAAGCCCTGAACCAAACTTCGAGGAGGACAGGGCCATTGGTGGAGTCTCCCTCGCCATATCAAGGCCTGAGGATTTCCTTCCATTGCCAAACAACGGGGAGAAAGAAGATCTGGATTACCTCGCCGCTCATTTGGACGGAAGctgggaaaatttccccggagctcTAGTTATatccggaggaggatttaatcccattatcatcggatccatcaaaagaaagTTCGATGAGTTAGAGAAAGCATCCCCAGTTGGAGAGATCAAAATAACtgaggtaaaagaaagctccGTTCCATTGGCATTCTATAGGGAAGAAGTCCCCGGGGGATCACCAAACTTTCAGATTCCCTTGCTCGttagagcaaaaatggccaacttcgatgtgagaagaatcctcgtcgatcaaggaagctcctgtgacattatgtactcaggactcttcaaagtgctgcagcttaccgaggaaAACTTGGTCCCATACGTTGGATCCGACCTCCAAGGATTCAACGGATCAACAACAaagccttggggatacgtggacctgatcgtcaccttcggcGAAAATAAGGCCATGAAATCTATAAAGGTCAAATTCTTGGTCGTCGAATGTCCATCGCtctacaactgcatcattggacgaccaactttagctgaactgtttgcagtgtcctccACTATCCATCTGAAGCTCaagtattacactaaggatggacaggtcgccgcaatcaacggggacatagaagctgctcggcgatgctttgaagctgcgtccaagaacctcaactctgtggttacgctgaagaagaagagagaagaagcaAAGCTGCCCGGCGTAAATTTAATCAGCACTGAGGATGCAGTCGAACTAGATGCTCAAACTTCCAAGAATGAGCGCAAACAAGAGAAAAAGGCGATGAAGGACGACCTcttgatcaaggaaaactatcgccccatccctgatggagagttcgaactagttccccttggcgaggatccagcAAAGGGCAtcaagattggagctgatctccccgacttggtcaaaaggcagttgaaagcgtGCTTAAGAGAGAATGCTGAACTGTttgcttggagtgcagctgaaatgcccgggatagaccccgagGCCATTTTGTTTACTGTGATTTTGTCTGTTGAAGCAGATCTAAGGAATATTAAAAAGAACTATGATATGTGGAAGGCTACCGGAGAGGATTATTCAGTTGAACCAGCTGAGTCCATAAGGCCTTTATGCACCCTCATTGATGTTGGTCTTGTTAAGACCACAACCGAAAACCGCGTCTTTGGTGCACTCAAGGGAGCTTTGGATGGAGGTTTGGATGGAGTTTGA 2253 0.3125 MAGANHEFVGENNPPNPPHQSDGVETSVTPEGSAAHAQVTPLDEPPPHHVPPPEDPLVVPQVPQGALMEVVMAALVNTINRKGQLLRELPQRSREVFVDTGRQHLKTTARDRAHFTTSRRHPKTVASLKAVIQGPEESLRSYIERFNKISVEVKATDKMKLYLLEEGLCEGTKFQEAVGIVEVETLDAFFELAQRFIKWEEKQKASEVRRPRKEKGRILSEISSAEFKSAGIRFPKQLPAKPNVDKKKFFRFHKSHGHVIEDCVHLKDAIEILIQKGYARQYVDGQRAANNPPRQNQLAADQASPEPNFEEDRAIGGVSLAISRPEDFLPLPNNGEKEDLDYLAAHLDGSWENFPGALVISGGGFNPIIIGSIKRKFDELEKASPVGEIKITEVKESSVPLAFYREEVPGGSPNFQIPLLVRAKMANFDVRRILVDQGSSCDIMYSGLFKVLQLTEENLVPYVGSDLQGFNGSTTKPWGYVDLIVTFGENKAMKSIKVKFLVVECPSLYNCIIGRPTLAELFAVSSTIHLKLKYYTKDGQVAAINGDIEAARRCFEAASKNLNSVVTLKKKREEAKLPGVNLISTEDAVELDAQTSKNERKQEKKAMKDDLLIKENYRPIPDGEFELVPLGEDPAKGIKIGADLPDLVKRQLKACLRENAELFAWSAAEMPGIDPEAILFTVILSVEADLRNIKKNYDMWKATGEDYSVEPAESIRPLCTLIDVGLVKTTTENRVFGALKGALDGGLDGV 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02375 750 PANTHER PROTEIN L5, PUTATIVE-RELATED 700 748 - -
Tsu08g02375 750 MobiDBLite consensus disorder prediction 1 57 - -
Tsu08g02375 750 PANTHER RIBOSOMAL PROTEIN L5-RELATED 700 748 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu08g02375 750 PRINTS Ribosomal protein L5 signature 721 740 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu08g02375 750 PRINTS Ribosomal protein L5 signature 741 750 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu08g02375 750 CDD retropepsin_like 432 519 - -
Tsu08g02375 750 MobiDBLite consensus disorder prediction 288 303 - -
Tsu08g02375 750 MobiDBLite consensus disorder prediction 287 310 - -
Tsu08g02375 750 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 693 748 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Tsu08g02375 750 Gene3D - 677 749 - -
Tsu08g02375 750 MobiDBLite consensus disorder prediction 14 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02375 Tsu-Chr8 34644997 34650946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02375 702 748 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 76.596 7.97e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02375 - - lang:109330912 237.269