Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02364 ATGGAACTCAATCCCACGCTTCTTCAATTCCTTCTCCTTCTCTTTGCTGTTCCTTGTTTCACTTCCACTTCGacACTTAATGAGACTTGTGGTCACTTTGATGCTTCATTCAATAGAGACACTAAAGCACCATGCCCAAATGGTTGGGTTATGGACCCTAATAAGACCAAGTGTTTTCTCCATGTTGGGAGGCCTCAATCTTGGAATGATTCAGAGACATGCTGTAACAAATATGGTGGACATTTAGCATCATTGTCTTCGCTTCAGGAGCTACATTTTGCTCAAAGTCTATGTGGTGAATCCATAAATAGTTGCTGGATTGGTGGAAGAAGACTCAACAACACTATATCGGGTTTTCAGTGGACATGGTCTGATAATTCTCAATGGAATAAATCCATGTTTCCTCTGGCTAATGTTCCACTTAATTGTACTGGAACTGGACAATCCTGTCTGAGGAACATTACAGAGAATGTATGTTCAGTAATGACTAATAATTCAAAATCTCTCATCAGTGAGAGATGTGATAATCCGCATGCTTCTCTATGTATACTTGACATAGATGCAAAATGTAACCGCCACAGGGACTACCTAATCATCCTTGCAGTGGTGAGTGGGTTGATACTCTCGACAACATTAGCAGTGATTGTCTGGCTTCTTGTATATAAGCGGGGAAAGAAGAGAAGACGATCTAGAAAACTAACTGATCCCGCTGCTTCACTTCCATCATGGAAAGTCTTTACCAAAGAGGAACTAAGGTCAATTACGAAAAACTTCAGTGAAGGAAACCGTCTTGTTGGGGATGCCAAGGCTGGTGGTACTTATAGTGGAGTCCAACCAGATGGCTCAAAGGTTGCTGTTAAGAGATTAAAGAGGTCAAGCTTTAAGAGGAAAAAGGAATTCTATTCCGAAATTGGCAGGGTTGCAAGGCTTCGACATCCAAATCTGGTGGTTGTGATGGGGTGCTGTTATGATCATGGTGACCGCTACATTGTTTACGAGTTTGTAGCTAATGGGCCCTTAGATAAATGGCTACATCACATACCAAGGGGAGGCCGCAGCTTAGATTGGGCAATGAGGATGAAAATTGCAACAACGCTTGCTCAAGGAATTGCGTTTCTTCATGACAAGGTGAAGCCGCAAGTTGTTCACCGAGATATACGAGCCAGTAATGTGCTGCTTGACGAGGAATTTGGAGCACACCTTATGGGTGTTGGCTTGTCCAAGTTTGTGCCATATGAAGCAATGCACGAGAGGACTGTGATGGCTGGTGGAACTTATGGATACCTTGCTCCGGAGTTTGTGTACAGAAACGAGCTCACAACAAAGAGTGATGTTTATAGTTTTGGTGTCCTACTACTTGAAATAGTTAGTGGACGTAGACCAGCACAAGCAGTTGATTCTGTGGGTTGGCAGAGTATATTTGAATGGGCTACACCTCTTGTTCAAGCTCATCGATACCCTGAACTGTTGGATCCTTATATATCTTCCTCGTCCACTAGTATCATCCCTGAGACTAGTTCTATCCAGAAGGTggttgaccttgtttattcatGCACGCAGCATGTCCCTTCTATGCGCCCTAGAATGTCGCACGTTGTTCATCAGTTGCAACAGTTTGCTCAGCCACCtgtaaaataa 1638 0.4267 MELNPTLLQFLLLLFAVPCFTSTSTLNETCGHFDASFNRDTKAPCPNGWVMDPNKTKCFLHVGRPQSWNDSETCCNKYGGHLASLSSLQELHFAQSLCGESINSCWIGGRRLNNTISGFQWTWSDNSQWNKSMFPLANVPLNCTGTGQSCLRNITENVCSVMTNNSKSLISERCDNPHASLCILDIDAKCNRHRDYLIILAVVSGLILSTTLAVIVWLLVYKRGKKRRRSRKLTDPAASLPSWKVFTKEELRSITKNFSEGNRLVGDAKAGGTYSGVQPDGSKVAVKRLKRSSFKRKKEFYSEIGRVARLRHPNLVVVMGCCYDHGDRYIVYEFVANGPLDKWLHHIPRGGRSLDWAMRMKIATTLAQGIAFLHDKVKPQVVHRDIRASNVLLDEEFGAHLMGVGLSKFVPYEAMHERTVMAGGTYGYLAPEFVYRNELTTKSDVYSFGVLLLEIVSGRRPAQAVDSVGWQSIFEWATPLVQAHRYPELLDPYISSSSTSIIPETSSIQKVVDLVYSCTQHVPSMRPRMSHVVHQLQQFAQPPVK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02364 545 SUPERFAMILY Protein kinase-like (PK-like) 233 536 IPR011009 -
Tsu08g02364 545 ProSitePatterns Tyrosine protein kinases specific active-site signature. 381 393 IPR008266 GO:0004672|GO:0006468
Tsu08g02364 545 ProSiteProfiles C-type lectin domain profile. 54 183 IPR001304 -
Tsu08g02364 545 Pfam Protein tyrosine and serine/threonine kinase 278 536 IPR001245 GO:0004672|GO:0006468
Tsu08g02364 545 PANTHER - 1 541 - -
Tsu08g02364 545 ProSiteProfiles Protein kinase domain profile. 259 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02364 545 Gene3D - 31 185 IPR016186 -
Tsu08g02364 545 SMART tyrkin_6 264 536 IPR020635 GO:0004713|GO:0006468
Tsu08g02364 545 CDD CLECT 57 182 - -
Tsu08g02364 545 SMART CLECT_2 45 183 IPR001304 -
Tsu08g02364 545 Gene3D Phosphorylase Kinase; domain 1 234 334 - -
Tsu08g02364 545 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 541 - -
Tsu08g02364 545 Pfam Lectin C-type domain 65 182 IPR001304 -
Tsu08g02364 545 SUPERFAMILY C-type lectin-like 37 183 IPR016187 -
Tsu08g02364 545 Gene3D Transferase(Phosphotransferase) domain 1 335 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02364 Tsu-Chr8 34424184 34429666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02364 75 542 Receptor kinase-like Gene Family AT1G52310 71.218 0.0 672
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_C-LEC Tsu08g02364 PK_Tyr_Ser-Thr 1.7e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02364 - - vra:106762676 916.376