Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02362 ATGGGAACAACGAAGAACACCAAAACCCAAGTagtcaaaaacaaacaaaaagacaAGAAAACCATTGCTGATGGAACCATCAAAGAAACCAAATCAGACAACAATAGTGTTTTTGCTTCTTGTTCCTTTTCTAGTCTTGGTCTTCACCCAACCTTATGTGACCAACTTcatgAAAGAATGGGTTTTGAAGGTCCAACATTAGTTCAAGCTCAAGCAATTCCTGTTGTTCTCTCTGGCCGGCATGCGTTGGTTAATGCTGCTACGGGCACTGGGAAGACTATTGCATACTTGGCTCCGATAATTCATCATTTGCAGAGTTCTGAGAAGCGAATCCAGCGCTCTGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGTGAGTTATGTTTGCAGGTTCATGAAATTCTTCAGAAATTATTGCACCGGTTTCATTGGATTGTTCCAGGATACATTATGGGTGGTGAAAGTAGATCAAAGGAGAAAGCCAGGCTGCGCAAAGGCATATCAATTCTTATTGCAACCCCTGGGCGCCTTTTAGACCACTTGAAGAATACAACATCATTCTTGTACACAAATTTGCGATGGATAATTTTTGATGAAGCTGATCGTATTTTGGAATTAGGATTTGGGAAAGAGATACAAGACATACTAAATCTTTTAGGTTCAATGAAACAAGAGAATGAAGTTCCTATTTCCTCTAAATTTCAAAGACAGAACCTGCTTTTGTCAGCCACCTTAAATGAGAAAGTAAATCACCTTGCTAAAATTAGTTTAGAGGATCCAGTGATGATTGGTATTGATGATAAAATAATGGAACCAACATCAAAAATTAGATTTGATCATTCAGATTCTGATGAAGACAACGAAGACAAGAATTCCAGTAAAATACAAGCAGTTGGAGCTTATAAAGTGCCTGAACAGTTGATTCAGAGATACTTGAAAGCACCCTGTGGATCACGACTTGCTATACTTCTTTCAATTCTAAAGCATCTTTTTGAAAGGGAACCTTCACAGAAGGTTGTGCTATTCTTTTCAACATGCGATGCAGTGGACTTTCACTATTCTTTGTTAACCGAATTCCTTTTCTCATCATATCCACAAACCGAAGAAGGGAACAGAACGATGTTTCTTGGATGTAAAACTCTTCGGCTACATGGTAATATGGAACAGGAGGATAGGACACGCAGTTTTCAGGCCTTTAAAACTGAGAAATCTGCCCTTCTTTTGTCTACTGATGTTTCTGCCAGAGGCCTAGATTTTCCAAATGTTAGATGCATCATACAATATGATTCTCCAGGGGAAGCTACTGAATATGTGCATAGAGTTGGAAGAACTGCTCGAATGGGTGAAAGAGGAGAATCCTTGTTATTTCTGCAACCAAGTGAAATAGACTATTTACAAGACTTGGAGAAACATGGTGTCTCGCTAGTAGAGTATCCTCTCGTCAAAGTGTTGGATAGTTTCCCACTGTCTGCACACAAGAACAACATAAAGAAATCTGTTTTCATAGACTTGCATCCCTGGATCATGTGTCTCCAGAAGGCACTCGAGTCCTTCATCTCATCCAAGCCCAAGATGGAGGAACTTGCGAAGAAGGCATTTTGTTCTTGGGTCCGTGCATACACAGCACATCGTGGGGAtctgaaaataatatttatggTTAAGAAACTTCACTTGGGGCACGTAGCGAAAAGCTTTGCATTGAAACAACAACCCTCATTAGTTGGAAAGTCATTCCAAAACCAAACTAAGAAGAGAAAgagatttgaaaagaaaaatgggtCGGCGAAATCAAGAAAAGTT 1803 0.386 MGTTKNTKTQVVKNKQKDKKTIADGTIKETKSDNNSVFASCSFSSLGLHPTLCDQLHERMGFEGPTLVQAQAIPVVLSGRHALVNAATGTGKTIAYLAPIIHHLQSSEKRIQRSDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGISILIATPGRLLDHLKNTTSFLYTNLRWIIFDEADRILELGFGKEIQDILNLLGSMKQENEVPISSKFQRQNLLLSATLNEKVNHLAKISLEDPVMIGIDDKIMEPTSKIRFDHSDSDEDNEDKNSSKIQAVGAYKVPEQLIQRYLKAPCGSRLAILLSILKHLFEREPSQKVVLFFSTCDAVDFHYSLLTEFLFSSYPQTEEGNRTMFLGCKTLRLHGNMEQEDRTRSFQAFKTEKSALLLSTDVSARGLDFPNVRCIIQYDSPGEATEYVHRVGRTARMGERGESLLFLQPSEIDYLQDLEKHGVSLVEYPLVKVLDSFPLSAHKNNIKKSVFIDLHPWIMCLQKALESFISSKPKMEELAKKAFCSWVRAYTAHRGDLKIIFMVKKLHLGHVAKSFALKQQPSLVGKSFQNQTKKRKRFEKKNGSAKSRKV 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02362 601 CDD SF2_C_DEAD 308 458 - -
Tsu08g02362 601 Pfam Domain of unknown function (DUF4217) 513 573 IPR025313 -
Tsu08g02362 601 PANTHER ATP-DEPENDENT RNA HELICASE DDX31-RELATED 24 592 - -
Tsu08g02362 601 Pfam DEAD/DEAH box helicase 67 252 IPR011545 GO:0003676|GO:0005524
Tsu08g02362 601 Pfam Helicase conserved C-terminal domain 326 449 IPR001650 -
Tsu08g02362 601 CDD DEADc_DDX31 52 265 - -
Tsu08g02362 601 MobiDBLite consensus disorder prediction 577 601 - -
Tsu08g02362 601 Gene3D - 318 599 IPR027417 -
Tsu08g02362 601 SMART helicmild6 351 449 IPR001650 -
Tsu08g02362 601 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 197 205 IPR000629 -
Tsu08g02362 601 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 496 IPR001650 -
Tsu08g02362 601 Gene3D - 2 267 IPR027417 -
Tsu08g02362 601 PANTHER RNA HELICASE 24 592 - -
Tsu08g02362 601 SMART ultradead3 61 278 IPR014001 -
Tsu08g02362 601 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 41 70 IPR014014 GO:0003724
Tsu08g02362 601 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 73 264 IPR014001 -
Tsu08g02362 601 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 470 IPR027417 -
Tsu08g02362 601 MobiDBLite consensus disorder prediction 581 601 - -
Tsu08g02362 601 SMART DUF4217_3 511 576 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02362 Tsu-Chr8 34409237 34416271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02362 42 480 Eukaryotic Initiation Factors Gene Family AT1G72730 25.792 3.49e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02362 K14806 - gmx:100805157 933.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02362 08 34409237 34416271 Tsu08g02362 08 34409237 34416271 ECH