Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02361 ATGAAGGCTCCTTCTAATGGTTATTTGGCTAATTCTGGTGAAGGTGAAAGGAAAGCCATCAATTCAGAGTTATGGCATGCTTGTGCTGGTCCGTTGGTTTCTATACCTCCCGTTGGAAGTCTTGTTGTTTATTTTCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAAAAGGAGGCAGATTTCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTCGCGCTACATGCTGACCCTGAAACTGACGAGGTATACGCACAGATGACCCTTCAACCTGTAAATAAATATGATAAGGAAGCAATGCTTGCTTCGGACATGGGACTAAAACAAAATCAGCAACCAACTGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACTAGCACTCATGGTGGATTTTCAGTGCCTCGTAGAGCTGCCGAGAAAATATTCCCACCTCTGGACTTCTCAATGCAACCACCAGCTCAAGAAATAGTTGCCAAAGATTTGCATGACACTACATGGACGTTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACTGGTTGGAGCGTCTTTGTTAGCACAAAAAGGCTCTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAGCAGCAACTTCTTTTAGGTATAAAGAGATCTAGTAGACAGCAACCAGCGCTATCTTCATCGGTAATATCAAGTGACAGCATGCATATTGGCATTCTTGCCGCTGCGGCTCATGCTGCTTCGAATAATAGCCcatttactatattttataatCCAAGGACCAGCCCCTGTGAATTTGTGATTCCATTGGCCAAATATAATAAAGCCTTGTACACTCATGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGATTCAGGAGTACGCAGATATATGGGCACAATCACTGGGATCAGTGACTTGGATCCTGTCAGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCTACAGCTGGTGAGCGCCCAAGCCGAGTTTCAATTTGGGATATTGAACCTGTTGTGACTCCTTTCTACATTTGCCCACCACCGTTTTTTAGGCCGAAGTTCCCCAAGCAACCAGGAATGCCAGAAGACGAGTCTGAAATAGAAAATGCTTTCAAGAGGGCTATGCCGTGGCTTGGAGATGAGCTTGGCATGAAAGATGCCTCAAGTTCAATATTCCCCGGTTTGAGTTTAGTCCAATGGATGAGCATGCAgcagaataataataataatcagtTTTCTGCTCCTCAATCAGGACTTTTACCTCCATCCATGCTTTCATCTAACACAATGCATGCTAACCTTAACACCGATGATCCATCCAAGATATTGAACTTTCAATCCCCTGCTGCTCCAAGTCTTCAATTTAACAAACCTAATTTCCCAAACCAAGTCAATCAATTGCAACAGACGTCGAATGTGTGGTCtcaacagcaacaacagcaGCAGAAGATGCAGTCGATGTTGCAAACACCGTTAAACCAGCtgcagcaacaacaacagcagcagcagcagagGCAACATCAACTGGCTGGACCACAAAACCTGCCGCAGATGCAGCAACAACAGCCGCAACTGACTCAATCCAATGCACATCAGCCTCAACCAcagcaacagcaacaacaacaacaacagcagcagcagcagcagcagcaacaccAACAGCCGAGTCAAAACACGACTATGAATAATGGAACAGTTGGTTCTAACCAGATTCCGAATCAGTGTGTACAGCAACCTGTAACGTATTCACCACTTCAGCAACAGTTGCTCTCGGGAAATATCCAAACCCAACAAAATTTACAGTCAGTTGGCAAGAATGGATTGATAATGACGTCCTTACCGCAGGACTCACAATTTCAGCAACAGATAGACCAACAACAACAAGCTAGTCTCTTACAGcggcagcagcagcaacaacaacagaCTCAGTTGCAACAATCTTCATTACAGTTGTTGCAACAAAGCATGTTACAAAGGGGACCACAGCAATCACAAATGACTCAAATTTCGGCGCAAAACACCTCAGACCAACACCAACAACAGATGCAATTGCTGCAGAAGttgcagcagcagcagcaacaacaacagcaaccaCTTTCCACGTCTTCCCCACTTTTGCAGTCTCAGCTTCTGCAGCAACAAAACCAGCAATTGCCGCAGCAGCCTATGTCACAGCATCATCAGCCTCAACAGCTTGGTAACAACGCATTCTCGATGGAGAAGCTTCTCAACAACAATTACTCTTCTTCAGCTCTCGTGCATCCGCAGCAGCTTCCTGTGAACAATCACCAGAATAGACAAAAATCACCAACAAATACTAGAGCTCCTTCTGCTTTTACAGATGGAGATGCCCCGTCATGCTCAACATCGCCATCTACTAATAACGGTCAGACATCGCCTCCAAACCTCCTGAAAAGAAATCAACCAGATGTATTTGGAGGGCCTGTGACAGCTGAAACCACCAATAATATGATGCAGGAGCTTCAAAGTAAGTCTGACATGCAGAACAAACACGAATTACTAGGTGTAAAAGGACCTGACAAGCAAAAGTACAAAGGAGTGATCAATGATCAGATGGAAGCTTCTTCTGGAACATCTTACGGTATTGATCCTGGTAACATCCACCAGAACTTTCCACTTTCCAACTTCTACATGGATAGTGATGTCCACTCGCAACAACCAAGAAATAACTTACCATTTGCCTCTAATCTTGATGGATTAACACCTGATCCTTTGCTCTCAAGAGGGTATGATTCTCAAAAAGATCTTCAAAACTTGTTGTCTAATTATGGTGGTGCTCCGAGAGATATTGAAACTGAGCTGTCCACTGCTGATATTAGTTCACAGTCGTTTGGGGTGCCGAACATGTCTTTTAAGCCAGGATGCTCAAGTGATATTGCTATCCCTGATACTGGCGTTATGAATAATGGCTTGTGGTCTAATCAGACTCCACGAATGCGAACATATACTAAGGTTCAAAAATGTGGCTCGGTCGGAAGATGTATTGATGTCACTCGTTACAAAGGATATGAAGAACTCCGGAATGATTTGGCTCGTATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGACTGGAAACTAGTATATGTGGATCACGAAAACGACATTCTTCTCGTCGGTGATGACCCTTGGGAAGAATTTGTAAACTGTGTCCAAAGCATAAAGATACTATCATCTGCTGAGGTACAACAAATGAGCTTGGAAGGGGACTTAGGTTATGTTCCAATCACCAACCAAGCTTGTAGCGGTTCAGAAAGCGGTAATGCATGGAGGGCACAGTACGATGATAACTCTGCAGCCTCGTTTAATCGATAA 3402 0.4124 MKAPSNGYLANSGEGERKAINSELWHACAGPLVSIPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAMLASDMGLKQNQQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESEIENAFKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQNNNNNQFSAPQSGLLPPSMLSSNTMHANLNTDDPSKILNFQSPAAPSLQFNKPNFPNQVNQLQQTSNVWSQQQQQQQKMQSMLQTPLNQLQQQQQQQQQRQHQLAGPQNLPQMQQQQPQLTQSNAHQPQPQQQQQQQQQQQQQQQQHQQPSQNTTMNNGTVGSNQIPNQCVQQPVTYSPLQQQLLSGNIQTQQNLQSVGKNGLIMTSLPQDSQFQQQIDQQQQASLLQRQQQQQQQTQLQQSSLQLLQQSMLQRGPQQSQMTQISAQNTSDQHQQQMQLLQKLQQQQQQQQQPLSTSSPLLQSQLLQQQNQQLPQQPMSQHHQPQQLGNNAFSMEKLLNNNYSSSALVHPQQLPVNNHQNRQKSPTNTRAPSAFTDGDAPSCSTSPSTNNGQTSPPNLLKRNQPDVFGGPVTAETTNNMMQELQSKSDMQNKHELLGVKGPDKQKYKGVINDQMEASSGTSYGIDPGNIHQNFPLSNFYMDSDVHSQQPRNNLPFASNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSSDIAIPDTGVMNNGLWSNQTPRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSAEVQQMSLEGDLGYVPITNQACSGSESGNAWRAQYDDNSAASFNR 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02361 1133 MobiDBLite consensus disorder prediction 779 824 - -
Tsu08g02361 1133 ProSiteProfiles PB1 domain profile. 1006 1090 IPR000270 GO:0005515
Tsu08g02361 1133 MobiDBLite consensus disorder prediction 427 464 - -
Tsu08g02361 1133 MobiDBLite consensus disorder prediction 675 705 - -
Tsu08g02361 1133 CDD B3_DNA 125 217 IPR003340 GO:0003677
Tsu08g02361 1133 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Tsu08g02361 1133 Coils Coil 690 714 - -
Tsu08g02361 1133 MobiDBLite consensus disorder prediction 779 837 - -
Tsu08g02361 1133 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Tsu08g02361 1133 Pfam AUX/IAA family 1005 1092 IPR033389 -
Tsu08g02361 1133 Gene3D - 123 227 IPR015300 -
Tsu08g02361 1133 Gene3D - 289 360 - -
Tsu08g02361 1133 Gene3D - 1002 1095 - -
Tsu08g02361 1133 PANTHER AUXIN RESPONSE FACTOR 19 1 1120 - -
Tsu08g02361 1133 SMART B3_2 126 228 IPR003340 GO:0003677
Tsu08g02361 1133 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1120 IPR044835 GO:0003677|GO:0006355|GO:0009725
Tsu08g02361 1133 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Tsu08g02361 1133 SUPERFAMILY CAD & PB1 domains 1019 1084 - -
Tsu08g02361 1133 MobiDBLite consensus disorder prediction 488 591 - -
Tsu08g02361 1133 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02361 Tsu-Chr8 34299644 34306793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02361 1 488 B3 DNA Binding Superfamily AT1G19220 81.429 0.0 827
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Tsu08g02361 AUX_IAA 8.4e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02361 K14486 - gmx:100804628 1586.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04461 04 52418330 52425697 Tsu08g02361 08 34299644 34306793 PCT