Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02360 ATGGATTCTGAGAATGTATACAAAGCTAGTGAACTCTTTCAAGCTCAAGCTCACTTATATGATCACATCCTTAGCTTCTTGAAACCAATGTCCATCAAGTGGGCAGTTGACCTCAATATACCAAATATCATCCACAATCATGGCCAACCCATTACGCTTCCTCAACTTGTCGCCGCACTTCAAATTCCAGAACAAAAAACCGCTTGTGTTCAAAGTCTCATGCGTTTATTGCCGcacaataacttttttataattgtgAATACGAACGAGCAAGAAACATATGATCTTTCTCCAGCATCAAAGCTTCTTGTCAAAGGCACTGATCATTGTTTAACACCAATGGTTCAGTTGATAACAAATCCAtttcttgttgatttatataatcATTTGAGTAAATGGACTTGTGGAGAGGAACTCACAATTTATGAGACTGCATTAGGTAAAGATGACTATTGGAGTTTTATGCATCAAAATTCATTACATTTGAAGTCTTTCAATGAGGCTATGGAAAGTGATTCTAATTTTGTGAGGTTGGCACTAAGAGATTGTAAATCAGTTTTCGACGGTTTGACTTCTCTGGTAGATGTTGGAGGTGGAACCGGAAACACAGCTAAAATTATTTGTGAGACATTTCCGATGTTAAAATGCACAGTTTTAGACCTTCCACAAGTTGTAGGCTTGTAG 684 0.3596 MDSENVYKASELFQAQAHLYDHILSFLKPMSIKWAVDLNIPNIIHNHGQPITLPQLVAALQIPEQKTACVQSLMRLLPHNNFFIIVNTNEQETYDLSPASKLLVKGTDHCLTPMVQLITNPFLVDLYNHLSKWTCGEELTIYETALGKDDYWSFMHQNSLHLKSFNEAMESDSNFVRLALRDCKSVFDGLTSLVDVGGGTGNTAKIICETFPMLKCTVLDLPQVVGL 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02360 227 Pfam Dimerisation domain 30 77 IPR012967 GO:0046983
Tsu08g02360 227 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 227 IPR016461 GO:0008168
Tsu08g02360 227 Pfam O-methyltransferase domain 127 225 IPR001077 GO:0008171
Tsu08g02360 227 PANTHER O-METHYLTRANSFERASE 4 225 IPR016461 GO:0008168
Tsu08g02360 227 PANTHER FLAVONOID 4'-O-METHYLTRANSFERASE 4 225 - -
Tsu08g02360 227 Gene3D Vaccinia Virus protein VP39 104 226 IPR029063 -
Tsu08g02360 227 SUPERFAMILY "Winged helix" DNA-binding domain 10 107 IPR036390 -
Tsu08g02360 227 Gene3D - 2 103 IPR036388 -
Tsu08g02360 227 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 109 225 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02360 Tsu-Chr8 34296158 34296841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02360 29 225 Monolignol Biosynthesis Gene Families AT5G54160 27.053 5.17e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02360 K22588 K13262 ag:AAC49926 249.21