Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02353 ATGCCAATGCCGCGGGGATTTTCATTCATCTCTATTTTCTTGCTCGCTCAagCATTGGAGATTGTTGATAGCTTGAAAAATACTATGGCTAACAGCCCAGCTTACCGCTTTTTTCCTCCTAACATGATGACTGAAGCCCGTCCCATGACTAGACCTGGACAGTTTGACGATCTTCCTTGGAATAAATCAATGCTTACCTATCTGGAACATAAGCTGGAAGTAGACACTCTTATAACTGATGACCTGAAGAAAAGGCTGAAGCAGATGCAGGAATCTGATGCTGATCCTGAACTGATTGATATAATCCACTGTAATATACAGTACATGCTTGCTCTGTTGGAAAAGGTTACCGCTGAAATCGCGCTTGAGAAGAAGAGGATAGCTGAAGCTCAAAAACATACAACTGAAGTTCCAAAGAAGCAGGTGAAGAGACCTAGAAAGTTCCAAAGCAGCAGAAGAAAATGTTGGAGGCTTAAGAAGAACGTCATCCAAAATCGTGGTCAATCAGTCGATCTTCATTCTCATCGGCAGATACCTATCTTCACCGCACTTTTGGAGAGGTTAGCTCAGAACAAGAAAGCATGTTATGAAGTATTACAACGGTACCAGAGGAACCTTATGGGAGAAGATCTTGGCCCTCTGAGCTGTAAAGAGTTAGAGATGCTTAAAAGCCAGCTAGATTCGTCCTTGAAGCAAATAAGATCAACAAGGTTGGTTGAATCTGTTTTGATTAAAGTCGTGGAGGAGTTCGAGCATCGCATTGCAAGCCAGGATGAACAGTTCATGCAAATGAAATTTCATGAGGAGTTCTCCAATTTAGGCATGCACATTCACGGTTTAGCTCATGCTGCTTCTGGATATCATAGAGTTCTCGAAGAAAATGGCAAACTATACAATGAAGTCCAGGATCTTAAGGGGAGTATTAAGGTGTACTGTCGAGTAAGACCTTTCTTATCTGGACAACCAAATCATTTGAGTACCGTAGAGAACATGGAAGATGAGTTATCACAATTAATGTTCCTTCAAAGAATGGGAAAGGGCGCAGATCCTTCAACTTTAACAAAGTCTTTTGGACCATCTGCAGCCCAAGGGGAAGATCAGGAAAAACTTCACCATGCAATTGGAATTCTTGGCTTGTTATCTTTTGGAGCTCCTGTCTATTTGTCTCTTAATACTCCAGCAATtgcaattttttag 1197 0.4119 MPMPRGFSFISIFLLAQALEIVDSLKNTMANSPAYRFFPPNMMTEARPMTRPGQFDDLPWNKSMLTYLEHKLEVDTLITDDLKKRLKQMQESDADPELIDIIHCNIQYMLALLEKVTAEIALEKKRIAEAQKHTTEVPKKQVKRPRKFQSSRRKCWRLKKNVIQNRGQSVDLHSHRQIPIFTALLERLAQNKKACYEVLQRYQRNLMGEDLGPLSCKELEMLKSQLDSSLKQIRSTRLVESVLIKVVEEFEHRIASQDEQFMQMKFHEEFSNLGMHIHGLAHAASGYHRVLEENGKLYNEVQDLKGSIKVYCRVRPFLSGQPNHLSTVENMEDELSQLMFLQRMGKGADPSTLTKSFGPSAAQGEDQEKLHHAIGILGLLSFGAPVYLSLNTPAIAIF 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02353 398 Gene3D Kinesin motor domain 250 375 IPR036961 -
Tsu08g02353 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 361 IPR027417 -
Tsu08g02353 398 Pfam K-box region 193 262 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu08g02353 398 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 216 259 - -
Tsu08g02353 398 ProSiteProfiles K-box domain profile. 182 276 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu08g02353 398 PANTHER KINESIN-LIKE PROTEIN KLP-3 260 365 - -
Tsu08g02353 398 PANTHER KINESIN-LIKE PROTEIN KLP-3 216 259 - -
Tsu08g02353 398 Coils Coil 185 205 - -
Tsu08g02353 398 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 260 365 - -
Tsu08g02353 398 Coils Coil 113 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02353 Tsu-Chr8 33906258 33912337 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02353 196 269 MADS-box Gene Family AT1G24260 47.297 9.87e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02353 K10406 - gmx:100795476 160.999