Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02345 ATGGTGAAAACAAATATGGAGAAACCTGCGACGGAACAAAGTGATGCTTCATTGTTCCGAGGAGTGAGGAAGAGAAAATGGGGAAAATATGTGTCGGAAATTCGGCTACCAAACAGCCGCCAGAGAATTTGGTTAGGTTCTTATGATTCTGCCGAGAAGGCGGCGCGTGCTTTCGATGCGGCAATGTATTGCTTACGTGGCAGTGGTGCTAAATTCAATTTCCCCGGTGATCCGCCGAATATTGCCGGAGGAAGGTCCATGACACCTTCTCAGATTCAAGAAGCTGCAGCCCGTTTTGCTAATTCGGATATCCATAATGAGAAATCGGGTCGACCCGAGAATGTGAAAGCGGAATCTGAGGAGTCGGAGGAGGAGGAGACTTTAATGTTGCCTATGGAATCATCGTCTCCGGCATTGTCAGATGCGACTGTTCAAACGGATTTTGATTTTAAGCAAAATGGGTTGTTTTCGGATTTGGTTGGTGGAAATGAGTCGGGTTATAGTGGACCCGATTACTCTGGTTTTCCgggttttgatgattttcgTGGAGATTTCTATGTGCCGGGGTTGCCAAGTTATGATTATGGAGAAGAGAACATGGATGGGTTGATAGTTCATGATTCATTTTTGTGGAATTTCTAA 642 0.4424 MVKTNMEKPATEQSDASLFRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSAEKAARAFDAAMYCLRGSGAKFNFPGDPPNIAGGRSMTPSQIQEAAARFANSDIHNEKSGRPENVKAESEESEEEETLMLPMESSSPALSDATVQTDFDFKQNGLFSDLVGGNESGYSGPDYSGFPGFDDFRGDFYVPGLPSYDYGEENMDGLIVHDSFLWNF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02345 213 Pfam AP2 domain 19 67 IPR001471 GO:0003700|GO:0006355
Tsu08g02345 213 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Tsu08g02345 213 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Tsu08g02345 213 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 213 - -
Tsu08g02345 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 213 - -
Tsu08g02345 213 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Tsu08g02345 213 MobiDBLite consensus disorder prediction 102 128 - -
Tsu08g02345 213 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Tsu08g02345 213 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Tsu08g02345 213 MobiDBLite consensus disorder prediction 104 118 - -
Tsu08g02345 213 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Tsu08g02345 213 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02345 Tsu-Chr8 33661290 33662335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02345 1 213 AP2-EREBP Transcription Factor Family AT1G74930 48.165 4.02e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g02345 AP2 1e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02345 - - mtr:MTR_2g043040 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02345 08 33661290 33662335 Tsu08g02345 08 33661290 33662335 ECH