Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02338 ATGGTGAAATCAAATGTGGAAAAAACTGCGGCGGAAAGAAGTGATTCTTCATTGTACAGAGGAATAAGGAAGAGGAAGTGGGGGAAATGGGTGTCGGAAATCAAATTACCAAACAGCCGCCAGAGAATTTGGTTAGGTTCCTATGACTCCGCTGAAAAGGCGGTGCGTGCATTTGATGCCGCAACGTTCTGCTTACGTGGCAGTGGAGCCAAGTTTAATTTCCCTAGTAATCCGCCGGATATTCCCAGAGCAAGGTCTATGACCCATTATGAGATTCAAGCTGCCGCAACCCGTTTTGCCAATTCGGATATCCATAATGATAAATCGGATCGACCCgataataaaattattgaaaCACCGTCTTTGTCGGAGGTGACGGCATTGTTGCCTATGGAGTTACAGCCTCCCGCACTTTCCGATACGACGGTTCAGACCGAGAGTAATGTTACGGATAACGGGTTGTTTACGCACATGTTTTCAGAAACTGAGTCCGGTTATTCAATGTTTCCGGCTTTTGATGATTTTTGTGGTGAATTCTATGTGCCTGAGATGACAAATTTTGACTATCAAGAAGAGAAGTCAGATAGGGTGATTATTCTGGATTCCTTCTTATGGAATTTCTAA 624 0.4343 MVKSNVEKTAAERSDSSLYRGIRKRKWGKWVSEIKLPNSRQRIWLGSYDSAEKAVRAFDAATFCLRGSGAKFNFPSNPPDIPRARSMTHYEIQAAATRFANSDIHNDKSDRPDNKIIETPSLSEVTALLPMELQPPALSDTTVQTESNVTDNGLFTHMFSETESGYSMFPAFDDFCGEFYVPEMTNFDYQEEKSDRVIILDSFLWNF 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02338 207 Pfam AP2 domain 18 67 IPR001471 GO:0003700|GO:0006355
Tsu08g02338 207 Gene3D AP2/ERF domain 18 76 IPR036955 GO:0003700|GO:0006355
Tsu08g02338 207 CDD AP2 17 75 IPR001471 GO:0003700|GO:0006355
Tsu08g02338 207 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Tsu08g02338 207 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Tsu08g02338 207 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Tsu08g02338 207 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Tsu08g02338 207 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Tsu08g02338 207 PANTHER TRANSCRIPTION FACTOR AP2-EREBP FAMILY-RELATED 3 207 - -
Tsu08g02338 207 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 3 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02338 Tsu-Chr8 33524819 33525529 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02338 17 207 AP2-EREBP Transcription Factor Family AT1G19210 42.857 5.20e-44 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g02338 AP2 9.3e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02338 - - mtr:MTR_2g043040 286.96