Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02333 atGTCTAGTTCATCGGAATTCTCAGAGGTTTCCGGCAACAAGCCACCGGCGAGGTCACCGGAAAAGTTAacaactttctctcaaacatgTAATTTGTTGAGTCAATATATTAAGGAGAAGGGTTGCTTCAAAGATCTTTCTCTTGGTATGACATGCAACACCGACCCAACTGGGTCTTCTGAGACATCTCAATCTGCAACAACCATGAACTTGTTTCCTACCATGGAAAACAACTTGACACCAAAGAATCTTACAACTATGGATTTGCTCACTCCACAAGCTGCTTTGAATAATTCTAATGCTATTAAGGGGCCTAAAGCTGCACAATTGACAATGTTTTATAACGGTCAAGTGATTGTAATCGACGATTTTCCTGCTGATAAAGCCCATGAACTTATGGGTTTTGCTAACAAAGGAATTTCTCAAAGTCAGAACAATTCTGTGTACACTTACACACAAAGTCAGCCTTCATTTCCTCCTAATATGGTCCGACCTTCGGTTGATTCAACTGCTCCAGTTACTACTATGAACATCATCCCTAGTACTTCCACGGCTACTGGCCCTCAAGTGCTTTGCAGACCTAATGTTTGCGATCTTCCAATTATGAGGAAAGCTTCGCTTCATCGGTTTCTTGCGAAGAGGAAGGATAGAGTTACTGCCAAAGCACCATATCAAGTTAATAAACAAGCTGAGTCCATGTCATGGCTTGTGGGTGCCAAATCAACTCAAATCTGA 735 0.4068 MSSSSEFSEVSGNKPPARSPEKLTTFSQTCNLLSQYIKEKGCFKDLSLGMTCNTDPTGSSETSQSATTMNLFPTMENNLTPKNLTTMDLLTPQAALNNSNAIKGPKAAQLTMFYNGQVIVIDDFPADKAHELMGFANKGISQSQNNSVYTYTQSQPSFPPNMVRPSVDSTAPVTTMNIIPSTSTATGPQVLCRPNVCDLPIMRKASLHRFLAKRKDRVTAKAPYQVNKQAESMSWLVGAKSTQI 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02333 244 ProSiteProfiles Tify domain profile. 103 138 IPR010399 -
Tsu08g02333 244 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 18 236 IPR040390 -
Tsu08g02333 244 Pfam tify domain 105 136 IPR010399 -
Tsu08g02333 244 SMART tify_2 103 138 IPR010399 -
Tsu08g02333 244 PANTHER PROTEIN TIFY 10A 18 236 - -
Tsu08g02333 244 Pfam Jas motif 200 225 IPR018467 -
Tsu08g02333 244 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02333 Tsu-Chr8 33256675 33258949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02333 1 236 Tify Gene Family AT1G19180 38.113 2.87e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Tsu08g02333 tify 1.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02333 K13464 - gmx:100801449 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04466 04 52451616 52453037 Tsu08g02333 08 33256675 33258949 PCT