Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02327 ATGGCTTTAGCCATTTCATCCACTTCATTATCAAGTTTTCCAAACAGAGAAATATGTCAAAAAGTATTCCACCAAGGAAAAACAACAACCTCATGGTTAAGCAGCAGCAGTAACAGTAGAAGAAAACTTACAATTAGAAATGCAAAAAAAGGAGTGTCAGATCAGTGTGTACCACTCCCTCCTGATAGGCCATTGTGGTTTCCTGGTAGTTCACCTCCTGAATGGCTAGATGGCAGTCTTCCTGGTGATTTTGGTTTTGACCCTCTTGGATTAGGGTCTGATCCAGAGTTATTAAAATGGTTTGCACAAGCAGAACTAATGCATTCAAGATGGGCAATGTTAGGAGTATCAGGAATCCTCATCCCAGAAATACTCGACAATATGGGTTACGTAAAAAACTTCTCATGGTACAATGCAGGTTCAGTCCAATATTTCACAGACCCAACAACACTATTCATTGTTCAACTCGCTTTAATGGGTTGGGCCGAGGGTCGAAGATGGGCCGATATAGTTAATCCAGGTAGCGTTGATATTGAACCGAAGTTGCCAAATAGGCCTAACCCAAAACCAGATGTTGGTTATCCTGGCGGGCTTTGGTTTGATCCTATGCAGTGGGGAAGAGGTTCACCTGAGCCTGTTATGGTTTTGAGGACTAAGGAGATTAAGAATGGAAGACTTGCTATGCTTGCTTTTCTTGGATTTTGTTTTCAAGCTGTTTATACTGGTGGCAGTCCTCTTGAAAATTTGATGGCTCATCTTGCGGATCCTGGTCATGTCAACATTTTCTCgGCTTTCACTTCAGGTTAG 807 0.4201 MALAISSTSLSSFPNREICQKVFHQGKTTTSWLSSSSNSRRKLTIRNAKKGVSDQCVPLPPDRPLWFPGSSPPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLGVSGILIPEILDNMGYVKNFSWYNAGSVQYFTDPTTLFIVQLALMGWAEGRRWADIVNPGSVDIEPKLPNRPNPKPDVGYPGGLWFDPMQWGRGSPEPVMVLRTKEIKNGRLAMLAFLGFCFQAVYTGGSPLENLMAHLADPGHVNIFSAFTSG 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02327 268 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Tsu08g02327 268 SUPERFAMILY Chlorophyll a-b binding protein 62 266 - -
Tsu08g02327 268 Gene3D Chlorophyll a/b binding protein domain 73 258 - -
Tsu08g02327 268 PANTHER PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 6, CHLOROPLASTIC 1 265 - -
Tsu08g02327 268 Pfam Chlorophyll A-B binding protein 72 238 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02327 Tsu-Chr8 33145714 33148580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02327 48 266 Chloroplast and Mitochondria Gene Families AT3G61470 64.840 3.45e-104 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02327 K08908 - gmx:100800374 436.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02327 08 33145714 33148580 Tsu08g02327 08 33145714 33148580 ECH