Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02326 ATGGCAGCTGCTTCTgttctcctcctcctcctcatctctctctcattttttctctccacCGCGGCGCAACCACAATCAGAAACACAATCTCTCCTCAAACTAAAACAATCCTTAACAAATTCTGACAAAATATTATCCTCATGGATCCCCAATGTCTCTCCATGTTCCGGCACATGGGTCGGCGTTATCTgcttcaacaacatcatcaccgGTCTCAATCTCGCCGGCCTCAGTCTCTCCGGAACAATAGATGTCAATGCCATTGCCGAGATTCGCGGCTTAAGAACACTCAACTTTATCAACAACTCCTTCTCTGGTCCTATTCCTCAGTTCAACAAACTTGGCACCATCaaatctcttcttctccaacAAAACCAATTCACCGGTCCAATTCCGCAAGATTTCTTTGCACAGTTAACTTCTTTGAAAAAAGTATGGTTCTCAGGTAACAAATTCTCCGGCAATATTCCGGTTTCCTTAACTGGACTTGATCTCCTCAAAGAACTGCACCTTGAAGGTAACCAATTCTCCGGTCAGTTACCGGATCTCAAACAAGATATCAAATCATTCGACGTTTCGAATAACCAACTAGAAGGTCCTATCCCCGAAAGTCTCGCGAAATTCGGTCCTGTTTCATTTGCCGGAAATGCAGGCCTGTGTGGAAAACCTTTGGAAAAGCAATGTGAcggttcatcttcttcttcgtcgtcttcatcatcatcttcttcttctacttctCCTTCGTTTTTGGATAGTGTTACTGATGCTCCAACCGAAACCGGGCCTGATATGGCATCTAAAGTGATGGTAATTCTGTTATTGGCAATTGCAGCAGCgatcctatttttatttttgaaatcgaGGCAGAGAAGACGGGACAATGATTTTAGCGTTGTGAGCCGAGATTCTAGCGTTGACGATGTAATGCAGGTGCATGTACCGATAAGTAGATCAGCTTCCTCCGCGTCAGAGAGAGTTGGGAGACGGAATGTGGGGGAATCTGCGAAGAGAGGCACGGGGGGTGGGAATAGAAATGGGATAGGTGATTTAGTGATGGTGAATGATGAAAGGGGTACATTTGGTTTGCAGGATTTAATGAAAGCTTCTGCCGAGGTATTGGGGAATGGCGGATTAGGTTCGGCTTATAAGGCTGCTATGTCGAGCGGGTTGAGTGTGGTTGTGAAGAGGATGAGGGAGATGAATAAAATTGGGAAAGATGTGTTTGATGCTGAAATGAGACAGTTTGGGAGGATTAGACATCCTAATATTTTAACTCCTTTGGCTTATCATTATCGGAGAGAGGAAAAGCTTTTCGTTACCGAGTATATGCCTAAAGGAAGCTTGTTATATGTGTTGCACGGTGACAGAGGAACATCACATGCAGATTTAACATGGCCTATCCGTTTAAAGATTGCTAAAGGAATTGCAAGAGGGTTAAGCTTCCTTTACACTGAATTTTCAACCTATGATTTACCTCATGGAAACCTTAAATCAAGCAATGTTTTACTAACTAATGAATATGAGCCACTTTTAGGTGATTATGCTTTTCAACCACTAATCAATCCTAGCATTGCAGTACAATCAATGTTTGCATACAAAACACCAGATTACATTCAAAACCAGAAGCTTTCGCAGAAAGCCGATGTTTATTGCCTTGGAATCATCATTCTCGAACTCATTACAGGGAAATTCCCTTCTCAGTATCATAGTAATGGTAAAGGTGGAACTGATGTTGTTCAATGGGTCCTCACAGCGATTTCTGAGAGACGAGAAGCTGAATTAATTGATCCTGAGTTGAAAGATAATGCATCAAATTCAATCAGTAATATGCTGCAACTTCTCTTAATTGGTGCTGCTTGTACCGAAAGCAACCCGGAACAAAGAGTGCATATGAAGGAAGCTATTAGAAGGATAGAGGAGGTACAACTCTAA 1932 0.3908 MAAASVLLLLLISLSFFLSTAAQPQSETQSLLKLKQSLTNSDKILSSWIPNVSPCSGTWVGVICFNNIITGLNLAGLSLSGTIDVNAIAEIRGLRTLNFINNSFSGPIPQFNKLGTIKSLLLQQNQFTGPIPQDFFAQLTSLKKVWFSGNKFSGNIPVSLTGLDLLKELHLEGNQFSGQLPDLKQDIKSFDVSNNQLEGPIPESLAKFGPVSFAGNAGLCGKPLEKQCDGSSSSSSSSSSSSSSTSPSFLDSVTDAPTETGPDMASKVMVILLLAIAAAILFLFLKSRQRRRDNDFSVVSRDSSVDDVMQVHVPISRSASSASERVGRRNVGESAKRGTGGGNRNGIGDLVMVNDERGTFGLQDLMKASAEVLGNGGLGSAYKAAMSSGLSVVVKRMREMNKIGKDVFDAEMRQFGRIRHPNILTPLAYHYRREEKLFVTEYMPKGSLLYVLHGDRGTSHADLTWPIRLKIAKGIARGLSFLYTEFSTYDLPHGNLKSSNVLLTNEYEPLLGDYAFQPLINPSIAVQSMFAYKTPDYIQNQKLSQKADVYCLGIIILELITGKFPSQYHSNGKGGTDVVQWVLTAISERREAELIDPELKDNASNSISNMLQLLLIGAACTESNPEQRVHMKEAIRRIEEVQL 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02326 643 Gene3D Ribonuclease Inhibitor 187 225 IPR032675 -
Tsu08g02326 643 SUPERFAMILY Protein kinase-like (PK-like) 371 638 IPR011009 -
Tsu08g02326 643 MobiDBLite consensus disorder prediction 317 348 - -
Tsu08g02326 643 Pfam Protein kinase domain 371 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02326 643 Gene3D Transferase(Phosphotransferase) domain 1 443 643 - -
Tsu08g02326 643 PANTHER LRR RECEPTOR-LIKE KINASE 6 643 - -
Tsu08g02326 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 6 643 - -
Tsu08g02326 643 SUPERFAMILY L domain-like 25 208 - -
Tsu08g02326 643 MobiDBLite consensus disorder prediction 227 255 - -
Tsu08g02326 643 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Tsu08g02326 643 CDD STKc_IRAK 373 640 - -
Tsu08g02326 643 MobiDBLite consensus disorder prediction 226 258 - -
Tsu08g02326 643 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Tsu08g02326 643 Gene3D Ribonuclease Inhibitor 24 184 IPR032675 -
Tsu08g02326 643 Gene3D Phosphorylase Kinase; domain 1 344 442 - -
Tsu08g02326 643 ProSiteProfiles Protein kinase domain profile. 367 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02326 Tsu-Chr8 33142267 33144722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02326 1 643 Receptor kinase-like Gene Family AT3G42880 48.250 0.0 619
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu08g02326 Pkinase 2.4e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02326 - - gmx:100790660 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04468 04 52467940 52470330 Tsu08g02326 08 33142267 33144722 PCT