Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02314 ATGGAAAACCAAGTAATGGCACTAAAGGAGAAAGGAATCGATGCAGAGTTTCTCTCCTCAACAAAAACAGCTAATGCAAAAGATAAGATATACGAGGACCTTGATTCTGGAAAACCGTCTACAAGGCTGCTATATGTGACTCCGGAGTTGATAGCAACCCCAGGGTTTACGTCGAAACTTAAAAAGATTTATTCCAGGGGGTTGCTAAGTCTCATTGCCATAGACGAGGCACATTGCATCTCTTCTTGGGGTCATGATTTCAGACCTAGCTATCGTAAGCTTTCAAATCTGAGAAACCACCTACCAGATGTACCAATATTAGCTCTGACTGCTACTGCTGCTCCTAAGGTTCAAAAGGATGTAGTGGAATCCTTGCTGATGCAAAATGCATTAATACTGAAGACTTCTTTTAATCGTCCTAATATATATTATGAAGTTAGATATAAAGATCTATTGGAAGATGCTTATGCTGATTTATCTGATAGACTCAAATCTATGGGAGATGTCTGTGCGATAATTTACTGCCTTGAACGTTCAATGTGTGATGACTTGTCAGGTCATCTATCCCAAAGAGGCATTTCTTGTGCTGCTTATCATGCAGGACTGAATAATAAAATGCGAACATCCGTGCTACAAGATTGGATTTCTTCAAAAACCAAAGTTGTTGTTGCCACTGTTGCTTTTGGGATGGGTATTGATAGAAAGGATGTGAGAATTGTATGCCACTTCAATATTCCGAAGTCAATGGAAGCATTCTATCAAGAGTCAGGCAGAGCTGGTCGTGATCAATTGCCCTCAACAAGTCTGTTGTACTATGGAGTAGATGATCGCAAAAAAATGGAATTTATATTGCGCAACTCAGGTAGCAAGAAGTCACAATCATCAAGTTCACAGGAAGAATCAACCAGAATTTCCCTGACTGCTTTCAATCAGATGGTTGAATATTGTGAAGGATCTGGATGTCGTAGGAAAATGATTCTCGAGAGTTTTGGGGAGCAGGTAACGGCATCATTATGTGGAAAAACATGTGACTCCTGTAGACACCCAAACGTAGTTGCCAGAAATTTGGAGGATCTCACAGCTGCCTGTGCTCTACGCCAGAAAGGCGGTTCTCGAGTTTTCATCACCAGTTCCACTGATGCAATTGATGGACAACAGTTATCTGAATTCTGGAATCGAGACGACGAAATAAGTGGATCTGAGGAAGATATTTCCAACTCAGATACTGACGGTAATGAGGTTGTTAACAATCTAGCTCGGTCAAAGGTTCAATTCAGACTGGGAGTAAATGAAAAGCTTAATTTGTTACAGAGGGCAGAAGAAAACTACTATCGAAATGAGAATGCTAATAGACAgAGCAACAAAGTTGACAAGAATGCTGTTTCTGATGCATTGCGAGGAGCAAGCAGGCAGAGATTACAAAATGCTTTAAAACAGGCTCAGCAACGGCTTGACGACTTTAAGATTGAAATGGAGACCTCGGCATCTCTTCTCGAAGATGAATGCTACAAGAAATATGGCAAGACTGGAAAATCATTCTATTACTCACAAGTGGCAAGTACTATCAGGTGGTTGACAACTACAAGTTCTGTCGATCTCATGAACCGACTTCGTGCAATTGATGCTTCTACATCACTGAATGTCTTCTCTGAAGCTGAACATCCCGTCACACCACCACCTGCTGCAGATCCTTGTACAAAGGAAGAAACTAGCAATGAGATTCCAGACAATGCTGTAACAGGCACAATCCCATGTGATGTGCCAATGGAAAGTTCTTTTAATACAAGTTTGCCACCAATACCATCCTTTGCTGAATTTTTAAATAGTAAGAAAGCAAAAAGAGATCAGTCAAGTGACACAAAAAAACACTCATCAAGAgtagaaaagaagaagaggatACAGTAG 1905 0.4021 MENQVMALKEKGIDAEFLSSTKTANAKDKIYEDLDSGKPSTRLLYVTPELIATPGFTSKLKKIYSRGLLSLIAIDEAHCISSWGHDFRPSYRKLSNLRNHLPDVPILALTATAAPKVQKDVVESLLMQNALILKTSFNRPNIYYEVRYKDLLEDAYADLSDRLKSMGDVCAIIYCLERSMCDDLSGHLSQRGISCAAYHAGLNNKMRTSVLQDWISSKTKVVVATVAFGMGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKKMEFILRNSGSKKSQSSSSQEESTRISLTAFNQMVEYCEGSGCRRKMILESFGEQVTASLCGKTCDSCRHPNVVARNLEDLTAACALRQKGGSRVFITSSTDAIDGQQLSEFWNRDDEISGSEEDISNSDTDGNEVVNNLARSKVQFRLGVNEKLNLLQRAEENYYRNENANRQSNKVDKNAVSDALRGASRQRLQNALKQAQQRLDDFKIEMETSASLLEDECYKKYGKTGKSFYYSQVASTIRWLTTTSSVDLMNRLRAIDASTSLNVFSEAEHPVTPPPAADPCTKEETSNEIPDNAVTGTIPCDVPMESSFNTSLPPIPSFAEFLNSKKAKRDQSSDTKKHSSRVEKKKRIQ 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02314 634 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 131 IPR014001 -
Tsu08g02314 634 SMART helicmild6 182 263 IPR001650 -
Tsu08g02314 634 CDD SF2_C_RecQ 139 272 - -
Tsu08g02314 634 Gene3D - 1 138 IPR027417 -
Tsu08g02314 634 MobiDBLite consensus disorder prediction 605 634 - -
Tsu08g02314 634 CDD DEXHc_RecQ 1 138 - -
Tsu08g02314 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 386 IPR027417 -
Tsu08g02314 634 MobiDBLite consensus disorder prediction 608 624 - -
Tsu08g02314 634 Pfam RecQ zinc-binding 276 347 IPR032284 -
Tsu08g02314 634 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 1 355 IPR004589 GO:0004386|GO:0006310
Tsu08g02314 634 Pfam Helicase conserved C-terminal domain 168 261 IPR001650 -
Tsu08g02314 634 Pfam DEAD/DEAH box helicase 3 119 IPR011545 GO:0003676|GO:0005524
Tsu08g02314 634 Gene3D - 139 365 IPR027417 -
Tsu08g02314 634 PANTHER DNA HELICASE RECQ FAMILY MEMBER 1 618 - -
Tsu08g02314 634 MobiDBLite consensus disorder prediction 551 580 - -
Tsu08g02314 634 Coils Coil 470 497 - -
Tsu08g02314 634 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 151 303 IPR001650 -
Tsu08g02314 634 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE 3 1 618 - -
Tsu08g02314 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 126 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02314 Tsu-Chr8 32734671 32743809 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02314 52 286 Eukaryotic Initiation Factors Gene Family AT3G19760 23.077 1.36e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02314 - K10901 gmx:100819601 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02314 08 32734671 32743809 Tsu08g02314 08 32734671 32743809 ECH