Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02291 atgaaaattaaatggAAATCAATTTTCCCAGCAAGTTGTTTCAAAGGAGAGTATCCatcaccaaaaccaaaaaaagttGTGTCAACAAAACCAAGAAGCTCTTCAACATCAACTCATAGAATTTCAATAGAAGAAATGAGTTATCCAAACACAACACAAGAGGATTTGTCTATTTCTTTAGTAGGGTCTAATCTTCATGTGTTTACAGTTGCTGAACTTAAGGTTATAACACAACACTTTTCTTCTAGTAATTTTATTGGAGAAGGTGGGTTTGGGCCTGTTCATAAAGGGTTTATTGAAGATAGGGTTAGGCCTGGTTTGAAAGCTCAACCTGTTGCTGTTAAGCTCTTGGACTTGGAAAGTAAACAAGGTCACAAAGAGTGGTTGACTGAAGTTGTTGTTCTGGGGCAATTAAGGCATCCACATCTTGTGAAGCTAATAGGATATTGTTGTGAAGATGAACATAGACTTTTGGTATATGAATATTTACCAAGAGGCAGCTTGGAAAATCAATTATTTAGAAgattcTCAGCATCACTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTTTAGCTTTTCTTCATGATGCAGAACAACCAGTTATTTATAGAGATTTCAAAGCTTCTAACATCTTGTTAGACTCGgATTATAATGCAAAACTCTCTGACTTTGGGTTGGCAAAAGATGGTCCTGAAGGAGATGACACCCACGTTTCAACAAGAGTTATGGGTACTCAAGGCTATGCTGCCCCAGAATATGTCATGACAGGTCACTTGACGGCCAAGAGTGACGTGTACAGCTTTGGAGTAGTTTTGTTGGAATTGCTAACAGGGAAAAAATCAGTGGACAAAAATCGTCCTCCAAGGGAACAAAACCTAGTAGATTGGGCAAGACCAATGTTAATTGATCCAAGAAAACTTAGCAAATTAATGGATCCTAAACTTGAAGGACAATATTCTGAAATGGGTACTAAAAAAGCAGCTGCATTAGCTTATCAATGTCTTAGCCATAGGCCTAAGAGTAGACCTACAATGAGCCAAGTTGTTAAGATTTTGGAACCCTTACAAGATTTTGATGATATTCCAATTGGACCTTTTGTTTACACTGTTCCAGTTGATATTAATGAAGGGGTTAAGGAAAAAGATCAAGCAAAGGAATGTGAAACACCTAAGGAGAGGAAAAGGGAAAACGGTCACTATCGTAGGAATGGTCATAGGCACCACCCACTTAAATCCCCGAGATCGCCAAACCCTCAATCGCAACCACAGTCACGGCCATCTTCACGGCAACAGTCACAACCGTCACCAAGGCCACGTCTGCAGGTTGACAAATACCGAAATGGTAGGGGAAGTTCGTCGAATTCTCCTTCGCCGCGCGAAACATAG 1401 0.389 MKIKWKSIFPASCFKGEYPSPKPKKVVSTKPRSSSTSTHRISIEEMSYPNTTQEDLSISLVGSNLHVFTVAELKVITQHFSSSNFIGEGGFGPVHKGFIEDRVRPGLKAQPVAVKLLDLESKQGHKEWLTEVVVLGQLRHPHLVKLIGYCCEDEHRLLVYEYLPRGSLENQLFRRFSASLPWSTRMKIAVGAAKGLAFLHDAEQPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAKSDVYSFGVVLLELLTGKKSVDKNRPPREQNLVDWARPMLIDPRKLSKLMDPKLEGQYSEMGTKKAAALAYQCLSHRPKSRPTMSQVVKILEPLQDFDDIPIGPFVYTVPVDINEGVKEKDQAKECETPKERKRENGHYRRNGHRHHPLKSPRSPNPQSQPQSRPSSRQQSQPSPRPRLQVDKYRNGRGSSSNSPSPRET 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02291 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Tsu08g02291 466 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 25 417 - -
Tsu08g02291 466 CDD STKc_IRAK 86 360 - -
Tsu08g02291 466 Gene3D Phosphorylase Kinase; domain 1 41 162 - -
Tsu08g02291 466 PANTHER OS01G0588500 PROTEIN-RELATED 25 417 - -
Tsu08g02291 466 MobiDBLite consensus disorder prediction 386 402 - -
Tsu08g02291 466 ProSiteProfiles Protein kinase domain profile. 80 361 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02291 466 MobiDBLite consensus disorder prediction 451 466 - -
Tsu08g02291 466 MobiDBLite consensus disorder prediction 20 39 - -
Tsu08g02291 466 MobiDBLite consensus disorder prediction 426 443 - -
Tsu08g02291 466 MobiDBLite consensus disorder prediction 386 466 - -
Tsu08g02291 466 MobiDBLite consensus disorder prediction 403 417 - -
Tsu08g02291 466 Gene3D Transferase(Phosphotransferase) domain 1 163 366 - -
Tsu08g02291 466 SUPERFAMILY Protein kinase-like (PK-like) 65 376 IPR011009 -
Tsu08g02291 466 Pfam Protein tyrosine and serine/threonine kinase 84 357 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02291 Tsu-Chr8 31986480 31989504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02291 66 357 Glycoside Hydrolase AT3G07070 54.576 9.28e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tsu08g02291 PK_Tyr_Ser-Thr 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02291 - - cam:101488466 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02291 08 31986480 31989504 Tsu08g00665 08 7133753 7136455 ECH
Tsu08g02291 08 31986480 31989504 Tsu07g00762 07 6278843 6281460 ECH
Tsu08g02291 08 31986480 31989504 Tsu01g00589 01 5171694 5174030 ECH
Tsu08g02291 08 31986480 31989504 Tsu08g02291 08 31986480 31989504 ECH
Tsu04g04476 04 52529323 52532100 Tsu08g02291 08 31986480 31989504 PCT