Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02259 ATGAACATGAACATGAACAAGAACAAGTACCCCTTTACTCCATTACAATGGCAAGAACTTGAACATCAAGCTCTTATCTACAAGTACATGGCTTCTGGTATCTCTATTCCACCTGATCTTCTTTTCACTATAAGAAAAAGCTACTTGGATAATCCTCTCTCTTCAAGACTTTTGCTTAGCCAGCCACAACAACACTATGGATGGAACTATCTGCAAATGGGTTTAGGAAGAAAAATAGATCCAGAACCAGGTAGATGCAGAAGAACAGATGGAAAAAAATGGAGATGTTCAAAAGAAGCATATCCAGATTCTAAATACTGTGAAAGACACATGCATAGAGGAAAAAACCGTTCAAGAAAGCCTGtggaaatttcaaaaacaacaccaacaaatactaataataatgcttcaacatttggAATCTCATCAATTACCAAAAATACCCCTGTATCAATAACTAATTCTTCTTTGTCCTTTGATACacaaaatcataaccaaaacTACCCTCAAAATTCCTTTATGTATCCTTCTCATACAACATCAAGGTCATTGTCATCATCTGGTATTGGTTTGTCTTTTGAAGACAATAGTTCTCCCTTGTTTCTTGACACTAATTCTTGCTCTCAGAATAATACAGATTACAGGACCAGGTATGTGTATGGACAGAAAGAAGAGGTAGATGAGTATGCATTCTTCAAAGAACCTTCTGGTAGCACTACTATGAAAAGCTTCTCGTCTTCGTCAATGGAACATGATCCTTGGCAATTAACACCACTCACTATGAGTTCTCCCTCGTCTTCATCTTTGAGACAGAGGAGCTATTCATCTTTGTCCAATGATTACTCATCCTTTTTGCAACTTCAATGTCTAAATGAACACTCGAAACAGCAAGAGCAAGATGAACCTCAGAAAACCGTTCATCGGTTCTTTGACGAATGGCCACACAAAGAGAGAGATCAATGGCTTGATTTGGATGATAAATCATCCACTACTCAACTCTCGATTTCTATTCCATCTTCTGCTCATGATTTTCCAACTTTCACTTCAAGAAATCACCATGATGGTTGA 1068 0.3539 MNMNMNKNKYPFTPLQWQELEHQALIYKYMASGISIPPDLLFTIRKSYLDNPLSSRLLLSQPQQHYGWNYLQMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEISKTTPTNTNNNASTFGISSITKNTPVSITNSSLSFDTQNHNQNYPQNSFMYPSHTTSRSLSSSGIGLSFEDNSSPLFLDTNSCSQNNTDYRTRYVYGQKEEVDEYAFFKEPSGSTTMKSFSSSSMEHDPWQLTPLTMSSPSSSSLRQRSYSSLSNDYSSFLQLQCLNEHSKQQEQDEPQKTVHRFFDEWPHKERDQWLDLDDKSSTTQLSISIPSSAHDFPTFTSRNHHDG 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02259 355 Pfam WRC 81 123 IPR014977 -
Tsu08g02259 355 MobiDBLite consensus disorder prediction 332 346 - -
Tsu08g02259 355 MobiDBLite consensus disorder prediction 161 180 - -
Tsu08g02259 355 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu08g02259 355 MobiDBLite consensus disorder prediction 111 140 - -
Tsu08g02259 355 MobiDBLite consensus disorder prediction 332 355 - -
Tsu08g02259 355 PANTHER GROWTH-REGULATING FACTOR 6 5 342 - -
Tsu08g02259 355 Pfam QLQ 11 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu08g02259 355 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Tsu08g02259 355 MobiDBLite consensus disorder prediction 123 140 - -
Tsu08g02259 355 ProSiteProfiles WRC domain profile. 80 124 IPR014977 -
Tsu08g02259 355 PANTHER - 5 342 IPR031137 GO:0005634|GO:0006351|GO:0032502
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02259 Tsu-Chr8 31194370 31197695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02259 11 123 GRF Transcription Factor Family AT3G13960 71.681 5.39e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Tsu08g02259 WRC 7.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02259 - - gmx:100814271 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu04g04488 04 52622401 52624376 Tsu08g02259 08 31194370 31197695 PCT