Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02249 ATGGCGGTGAATCTCTCGGCGAACGCTATTCCGGCGATAATCAACGGAGACGTTGACGCTAAACCGTTAGTTCAAGTTCTCGACATTGCAACAATCCAAAGTACCAAAAATTCTCAGACAGAGAGATACCGTCTTCTTCTTTCCGACTCCGTTTCATCTCACCACGCCATGCTCGCTGCTCAACTCAACGAGAAAGTCAAAACCGGACGTTTTAAGAAAGGAACAATCGTTCAGCTTCTCGATTACATTTGCACTTCTTTTCAGAATCGCAAGATTATTATGGTCCTCAACATGGAATCCATAATACCTGATTGTGAGATCATTGGTAATCCAAAGTCATTTGTGGATTCAGAATTACCTTTTCAGAAAGCATTGTGTGATAACAATGTGCAGAGTTCATCCagtggtaataataataatttggctGCTCAAAATAGAGGTAGTAATGTGCAGAATTTCAGGCCAACAGTTCAACCTGCATACAAACCTCCTCCGGTTTACAAAGGCCGTGGTGCAGTTGTGAAAAACGAGGCGCCGGCAAGTGTAATACCGATAGCCGCTTTAAATCCATATCAAGGTAGGTGGGCCATCAAGGCAAGGGTTACTTCTAAAGGGGATTTGCGCCGTTATAATAATGCTCGTGGAGATGGAAAAGTCTTCTCGTTCGATCTCCTTGATTCTGATGGAGGTGAAATCCGTGTAACATGTTTTAATGCTATTGTTGACCGCTTCTATGATGCAATTGAGGTTGGTAAAGTTTACTTGATATCCAAAGGAAACTTGAAACCCGCACAGAAGAATTATAACCATTTGAAGAATGATTGGGAAATTATGCTGGATTTAAATTCAACGGTTGAGCTTTGCCCAGATGAGGATGGTTCTATACCTAGACAGCAATTCTCCTTCAGGCCTATCAGTGACATTGAGAATGTTGAGAATAACGCTATCCTTGATGTTATTGGGGTAGTGACATATGTGAGTCCTTCAGTTCCCATCTTAAGGAAGAACGGAATGGAAACACTGAGAAGGATTTTGAATCTAAAGGACAATTCTGGCAGGAGTGTTGAGCTAACACTGTGGGGTGAATTCTGCAACAGGGAAGGACTAAAGCTGCAACAGATGGTAGATGCTGGGGTTTTCCCCATTTTAGCAGTAAAGGCAGGGAAGGTTAATGAATTCAGTGGAAAGTCTATAGGCTCTATTTCTACTACTCAGCTTTTCATAAATCCAGATTTCCCTGAGGCTCAGAGCTTAAGAAACTGGTTTGATCAAGTCGGAAAAGATTCTGCTTCTCTATCCATTTCTAAGGACATTACTCATGGAGGACCCAAGAATGAGATACGCAAAACTGTGTCTCAAATCAAAGATGAAGGTCTGGGGCGGTCAGACAAACCAGACTGGATAACATTGAGGGCAGCCATATCATTCATTAAGACTGATACATTTTGTTACACGGGTTGCCCTCTGATGATTGGAGATCGGCAGTGCAATAAGAAAGTGACAAGGTCAGGAGACACAAGATGGCAGTGTGATAGATGCAACCAGGAGTTTGAGGAATGCGACTATCGATACCTTCTCCAAGCTCAAATCCTGGATAATACTGGATTAACTTGGGTTACTGCTTTCCAGGAAGTAGGGGAAGAGATTATGGGGCACTCAGCTAAAGATCTGTATGAATTGAAGTATGAACAGGAGGATGATGAGAAGTTTGGAAATATAATCAAGAGTAGACTCTTCAACCAATTTGTATTTAGGCTGAAAATCAAAGAGGAATTATATGGCGATGAGCAGAAGGTGAAGATTACAGTAGTTAAGGCAGATAAGGTGAATTATTCTGCAGAGAGTAGATACATGCTTGATTTCATTTCCAAGCTCTGTAGGCAGTAA 1887 0.4144 MAVNLSANAIPAIINGDVDAKPLVQVLDIATIQSTKNSQTERYRLLLSDSVSSHHAMLAAQLNEKVKTGRFKKGTIVQLLDYICTSFQNRKIIMVLNMESIIPDCEIIGNPKSFVDSELPFQKALCDNNVQSSSSGNNNNLAAQNRGSNVQNFRPTVQPAYKPPPVYKGRGAVVKNEAPASVIPIAALNPYQGRWAIKARVTSKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAIVDRFYDAIEVGKVYLISKGNLKPAQKNYNHLKNDWEIMLDLNSTVELCPDEDGSIPRQQFSFRPISDIENVENNAILDVIGVVTYVSPSVPILRKNGMETLRRILNLKDNSGRSVELTLWGEFCNREGLKLQQMVDAGVFPILAVKAGKVNEFSGKSIGSISTTQLFINPDFPEAQSLRNWFDQVGKDSASLSISKDITHGGPKNEIRKTVSQIKDEGLGRSDKPDWITLRAAISFIKTDTFCYTGCPLMIGDRQCNKKVTRSGDTRWQCDRCNQEFEECDYRYLLQAQILDNTGLTWVTAFQEVGEEIMGHSAKDLYELKYEQEDDEKFGNIIKSRLFNQFVFRLKIKEELYGDEQKVKITVVKADKVNYSAESRYMLDFISKLCRQ 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02249 628 Pfam Replication factor-A protein 1, N-terminal domain 5 101 IPR007199 GO:0003677|GO:0005634|GO:0006260
Tsu08g02249 628 CDD RPA1_DBD_A 184 287 - -
Tsu08g02249 628 Gene3D - 294 433 IPR012340 -
Tsu08g02249 628 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 624 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu08g02249 628 CDD RPA1N 9 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Tsu08g02249 628 Gene3D - 434 625 IPR012340 -
Tsu08g02249 628 Pfam Replication factor-A C terminal domain 467 617 IPR013955 -
Tsu08g02249 628 CDD RPA1_DBD_B 316 423 - -
Tsu08g02249 628 Pfam Replication protein A OB domain 305 409 IPR031657 -
Tsu08g02249 628 SUPERFAMILY Nucleic acid-binding proteins 448 625 IPR012340 -
Tsu08g02249 628 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 622 - -
Tsu08g02249 628 CDD RPA1_DBD_C 451 624 IPR013955 -
Tsu08g02249 628 Pfam OB-fold nucleic acid binding domain 196 269 IPR004365 GO:0003676
Tsu08g02249 628 Gene3D - 4 115 IPR012340 -
Tsu08g02249 628 SUPERFAMILY Nucleic acid-binding proteins 299 426 IPR012340 -
Tsu08g02249 628 SUPERFAMILY Nucleic acid-binding proteins 181 294 IPR012340 -
Tsu08g02249 628 Gene3D - 180 291 IPR012340 -
Tsu08g02249 628 SUPERFAMILY Nucleic acid-binding proteins 1 110 IPR012340 -
Tsu08g02249 628 PANTHER REPLICATION FACTOR A 1, RFA1 2 622 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02249 Tsu-Chr8 30965110 30969891 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02249 26 624 Core DNA Replication Machinery Family AT2G06510 67.642 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02249 K07466 - gmx:100792409 1016.53