Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02248 ATGGCTGAAGAGGAACCTAAGGCTCTTAACTATATTCCAGAGTCCAAGGACTTTATAAAAAAGCCAGAGGATTTTATTCTTGAATATCGCAATAGGGAGGTTGACCTCATTAGAATGAAAAGGAGGGTCAAGAGGAGACGGGGAGAAAAATCAACCCTATGCAACAAGCCCATAATAGTCATTCGTATACAGGGGAAACAAGACATGCATCCTACAACAAGAAAACACTTATTGAGTTTGGGATTGAGAAAAATATTCAGTGCTGTCTTTGTGAAACCAACTGATGGAGTGATGGCCAAGCTGGCGAGAGTTGAACCATATGTTACTTATGGATATCCAAATCTTAAAAGCATAAAGGAGCTAATTTACAAGAAGGGACATGCAAAAATAGATAGGCGAAAAGTTCCTTTGACAGATAATAACCTTATTGAGCAGGAATTAGGAAGGTTTGGTATAGTTTGCATAGAAGACATGGTGCATCAAATTGAAAATGTTGGTCCATATTTTATGGAAGTTGTCAGATTTATGTGGCCCTTTGAACTGAACAAGCCAGCTGATGGATTGAAAGGATTGAAAAATCGATTCAAGGATGGTGGAGATTCAGGGGATCGCGAGGATCTCATCAATGAGCTCATcaataaaatgaattaa 651 0.3825 MAEEEPKALNYIPESKDFIKKPEDFILEYRNREVDLIRMKRRVKRRRGEKSTLCNKPIIVIRIQGKQDMHPTTRKHLLSLGLRKIFSAVFVKPTDGVMAKLARVEPYVTYGYPNLKSIKELIYKKGHAKIDRRKVPLTDNNLIEQELGRFGIVCIEDMVHQIENVGPYFMEVVRFMWPFELNKPADGLKGLKNRFKDGGDSGDREDLINELINKMN 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02248 216 Gene3D - 58 158 IPR036919 -
Tsu08g02248 216 Gene3D - 159 216 IPR036919 -
Tsu08g02248 216 SUPERFAMILY Ribosomal protein L30p/L7e 59 216 IPR036919 -
Tsu08g02248 216 CDD Ribosomal_L7_archeal_euk 58 216 IPR035808 -
Tsu08g02248 216 Pfam Ribosomal protein L30p/L7e 59 108 IPR016082 -
Tsu08g02248 216 PANTHER 60S RIBOSOMAL PROTEIN L7-1 14 216 - -
Tsu08g02248 216 PANTHER 60S RIBOSOMAL PROTEIN L7 14 216 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02248 Tsu-Chr8 30960814 30962749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02248 1 216 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 49.393 7.58e-74 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02248 K02937 - gmx:100306107 311.997