Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02239 ATGAAGCCTTTTCTCTTTTTGAATCATCCTGATACCAAGTTCAATTGCTCACAAGTTGATTGTAATTCCTCAATGGCCCATGCTCCTTATCCTTATGGCGATCCAATTTATGCTGGTTCTTTAGTTACTTACGCCCCACAGGCTGTTAATCAACCCCAAATGATGCCTCAAATGATGGGATTACCATCCGCTAGAGTTGCATTACCACTCGATCTTGCACAAGACGGGCCCATTTATGTCAATGCAAAACAATACCATGGTATACTGAGAAGGAGACAGTCACGAGCAAAGCTTGAGGCTCAGAACAAACTCATCAAAAGTCGTAAACCATATCTTCATGAATCTCGGCACAAGCATGCTTTGAATAGGGTTAGAGGGACCGGTGGGCGATTTCTCAGCACCAAACAACTTTCACAGTCTAATGCAGAATTTGTCACGGGTTCACATTCCGGCTCTGTCAACAAATATCAGAAGGAAGATCATTCCGGTATAGAAAGTCACCATTCCTCAAAAATCGGCGATAACGTATCTTCCATCACATCATGTTCCGACCGGACATGTTTTTCCGGTAACAGTTTCAATTTTAGGCAGCCAGAGCACATGTTTCTCGGGAACTCACCAAACATGGGCGGAGGAGCACCACAATGCAGTGGAGGACTCACATTTGGTGGAACAAAGCAACGCGCTTCGGTTGTCCGGTGA 702 0.4487 MKPFLFLNHPDTKFNCSQVDCNSSMAHAPYPYGDPIYAGSLVTYAPQAVNQPQMMPQMMGLPSARVALPLDLAQDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRKPYLHESRHKHALNRVRGTGGRFLSTKQLSQSNAEFVTGSHSGSVNKYQKEDHSGIESHHSSKIGDNVSSITSCSDRTCFSGNSFNFRQPEHMFLGNSPNMGGGAPQCSGGLTFGGTKQRASVVR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02239 233 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Tsu08g02239 233 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Tsu08g02239 233 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Tsu08g02239 233 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Tsu08g02239 233 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 217 IPR001289 GO:0003700|GO:0006355
Tsu08g02239 233 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 217 - -
Tsu08g02239 233 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Tsu08g02239 233 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Tsu08g02239 233 Gene3D - 74 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02239 Tsu-Chr8 30747600 30750518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02239 24 192 CCAAT-HAP2 Transcription Factor Family AT1G17590 46.111 1.78e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Tsu08g02239 CBFB_NFYA 1.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02239 K08064 - gmx:100793856 343.199