Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02233 ATGGAAGTTGCTGctagtggtggtggtggtgtacCTCAGTTTGACCCTCGTACTGTCGAAGCTGTTTTCCGTGACTTCAAGGGTCGTAGAGCTGGCATGATTAAAGCTCTCACTTCTGaTGTTGATGAATTTTACCAGCAGTGTGATCCTGAGAAGGAGAATCTTTGTCTGTATGGATATCCTGGTGGATTATGGGAAGTTGCTTTACCTGCTGAAGAAGTTCCTCCCGAACTTCCGGAACCTGCATTGGGCATCAATTTTGCCAGGGATGGAATGCAGGAAAAGGACTGGCTATCTTTAGTCGCTGTTCACAGTGATACTTGGCTACTCTCTGTAGCTTTCTACTTTGGGGCAAGATTTGGTTTTGACAGGGCCGACAGGAAGCGACTTTTCACTCTGATTAATGATTTGCCAACAATATTTGAGGTTGTAACTGGATCTGCTAAGAAACAGGCAAAGGAAAAGACATCAGGTTCGAGCCACAACAGCAACAAATCAAAGTCTGGTTCAAAAGCGCGTGGATCTGAATCGGCAAAGCATTCAAAGCCGGCAGcaaaagaagatgatgatgaaattgacgaagaagatgaagaagatcaAGGGGAGTGTGCTGCATGTGGTGAGAGCTATGCAAAAGCATCTGATGAGTTCTGGATCTGTTGCGACATATGTGAGAAATGGTATCATGGAAAATGTGTCAAGATCACTCCTGCCCGAGCGGAGCACATCAAGCAGTACAAGTGTCCTGCATGCAACAATAAGAGAGTTCGGCCTTGA 777 0.4208 MEVAASGGGGVPQFDPRTVEAVFRDFKGRRAGMIKALTSDVDEFYQQCDPEKENLCLYGYPGGLWEVALPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDTWLLSVAFYFGARFGFDRADRKRLFTLINDLPTIFEVVTGSAKKQAKEKTSGSSHNSNKSKSGSKARGSESAKHSKPAAKEDDDEIDEEDEEDQGECAACGESYAKASDEFWICCDICEKWYHGKCVKITPARAEHIKQYKCPACNNKRVRP 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02233 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 257 IPR013083 -
Tsu08g02233 258 MobiDBLite consensus disorder prediction 151 171 - -
Tsu08g02233 258 Pfam Alfin 18 146 IPR021998 GO:0006355|GO:0042393
Tsu08g02233 258 ProSiteProfiles Zinc finger PHD-type profile. 200 254 IPR019787 -
Tsu08g02233 258 PANTHER CPG BINDING PROTEIN 12 258 IPR045104 GO:0006355|GO:0042393
Tsu08g02233 258 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 12 258 - -
Tsu08g02233 258 SUPERFAMILY FYVE/PHD zinc finger 194 255 IPR011011 -
Tsu08g02233 258 SMART PHD_3 202 252 IPR001965 -
Tsu08g02233 258 Pfam PHD-finger 203 253 IPR019787 -
Tsu08g02233 258 ProSitePatterns Zinc finger PHD-type signature. 203 251 IPR019786 -
Tsu08g02233 258 MobiDBLite consensus disorder prediction 172 187 - -
Tsu08g02233 258 CDD PHD_AL_plant 203 254 IPR044104 -
Tsu08g02233 258 MobiDBLite consensus disorder prediction 151 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02233 Tsu-Chr8 30615853 30619567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02233 9 257 Alfin-like Transcription Factor Family AT3G42790 68.127 1.12e-112 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Tsu08g02233 Alfin 3.2e-67 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02233 - - rcu:8272513 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g02233 08 30615853 30619567 Tsu08g02233 08 30615853 30619567 ECH